RnoINT0045223 @ rn6
Intron Retention
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57661703-57662178:+
Coord C1 exon
chr3:57661703-57661807
Coord A exon
chr3:57661808-57662072
Coord C2 exon
chr3:57662073-57662178
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTGTTTTGTTTTGTTTTTAGTTC
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTTTTCGAGAACGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCAGGACTAGTCAGGCTGTACAGCTTCCAAGCCATCATCGAGCAG
Seq A exon
GTAGGGGAAAGCACAGTGGGATTGGACTCAAAGCTTTTTGTTGTGTGTTTTGTGGGTTTTGTTACTGTTTTTAACAACTCGGGTACTCGTATAGTTTTCAATTATACAAGTTACAGAAACAGAAAAAGACACAGTAACCTTTGCAAGAGGGGTGGGGAGGATAAAAGACATTTTCTCTGTCATGTACATGTAAATGTTATTTTTCTTTCCAGACAGCAAATAAATAGGCTCTAAAGCCACCATTTTTGTTTTGTTTTGTTTTTAG
Seq C2 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGTCAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403:ENSRNOT00000031463:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGAACGTCACAGATGCT
R:
TGATTTTAACATTACAAGGAATGCCA
Band lengths:
205-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]