GgaINT0046077 @ galGal3
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19474950-19475667:-
Coord C1 exon
chr7:19475560-19475667
Coord A exon
chr7:19475056-19475559
Coord C2 exon
chr7:19474950-19475055
Length
504 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATTGTTCTGCATTATTTTAGTTC
3' ss Score
7.2
Exon sequences
Seq C1 exon
ATATTTGGCAACAGTGTGACAGATGTTGCTATTTCTAATGGAATCCTGATTGTAATGTATAGCATGGGTTTGGTCAGGCTCTATAACTTCCAGGACATCTCTGAACAG
Seq A exon
GTAACATGAAATTTTTCATATGGTCCATGCTATTTTGTGGCAACAAATCATTAATATACTTGTAACATCACATAGGTACATAGGGATTGTGTCAACGGATAGAATTCTTGCCTAAGTCTATTTACAGTCTGAAGATATGAATGGGTGCACTGTCAGAAAATTCTAGCTATGCCAGTCACAGGTGGCAAAACATGAGAAGCAGGGCTGGACAGGCATTTCAACACATGCTAGAACAGAGCGTGTTGCTTTTTATGCACAGTCTGTAGTTACAAAAGAAAATGTTACGGTTAGAAAATGATGGGCATGAAAGTTTGTTTAATCTGAACCTGAACTACAGTGAACCTTTTAAGTTTACCTTCTTCCGATAAAAAAATTGGATGTTAATTCAAAATAAGACTTTGAGCAGCATCTAACAAGATAAAGAATGCAGTAGTAATGGAGCACTGAAGCAAAAAAGCAAGTAAATATGCATCAATAAAGCTGAATTGTTCTGCATTATTTTAG
Seq C2 exon
TTCATGGAGCGGCCATTTGACTTGGGAAGTGAACTCAATTGGAATGGTGAAGTGGGAGTTGTGGGAAAGTATCCATTTGGTCTTCCATGTAACATTAAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACAGTGTGACAGATGT
R:
TGGAAGACCAAATGGATACTTTCCC
Band lengths:
190-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]