MmuINT0046878 @ mm9
Intron Retention
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:70916117-70916636:+
Coord C1 exon
chr2:70916117-70916221
Coord A exon
chr2:70916222-70916530
Coord C2 exon
chr2:70916531-70916636
Length
309 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTGTTTTGTTTTGTTTTTAGTTC
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTTTTTGAGAATGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCGGGACTAGTCAGACTCTACAGCTTCCAAGCCATCATCGAACAG
Seq A exon
GTAGAGGAAAGCACAGTGGGGCATAGTACACTTGGTGTGCGGCTTGGGCGCAAAGGGTTTTGTTGTTGTGTGGTTTGTGGGTTTTGTTACTGTTTTTAACAAGTCGGTACTCATATAGTTTTCAATTATAAAAGTTATAGAAACAAAAAAAACACACAGTAACCTTGGCCAGAGGGGTGGGGAGGATAAACAGAAGGCCCTTGAATAAAGACATTTTCTCGGTCATGTACATGTAAATTTTATTTTTTCTTTCCAGACAGCAAATAAACAGGCTCTAAAGCCACCATTTTTGTTTTGTTTTGTTTTTAG
Seq C2 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGTCAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-Dcaf17:NM_001165981:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGAATGTCACAGATGCTACCT
R:
GTGATTTTAACATTACAAGGAATGCC
Band lengths:
206-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: