BtaINT0047616 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102730459-102734688:-
Coord C1 exon
chr11:102734549-102734688
Coord A exon
chr11:102730541-102734548
Coord C2 exon
chr11:102730459-102730540
Length
4008 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATATGTCCTTCTTTTTACAGCGT
3' ss Score
10.65
Exon sequences
Seq C1 exon
TACAACGCTCCGTCTTCACCTGCCGAATACATCCACCGGATTGGGAGAACGGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCGTCTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
GTGAGTCAGAAACCTGAACGGGGTTTCCGCTGATCTCTCCTAATTAACTTTCTGTCGCTTCTTACAGTGGCTGGGCCTTGTAAGCTGACGAAGAGCCATTAACCCTTGTGATCCCTCAATGAGTCCCAGGATAGCCAGTGGCAAAGACTAAAACCCTTCGTGCCGCCAGCACATGACAGCTCTCCCCGCATTGCCGCTCCGAGTCAGGGAATGAGCGGTTGCATTCCGTCTCTCTTTCAGGGAGAGGTCTGCACTCCATCGCTCTTGCTGTGAAGTGAGTGTGCACCACCCTCCCAGCCAGCTCCCCGAGGTCTCTTATAGTCACTGAGTTTTGTCTCCTGCAGTTCATTAACATTTTGGACTTTAGAGGTGGTTTATCTGTGAGAAAAATGATGCTTTGGACTCATCACTTTCCCTCCTCCTGGAAAGTGTGCCAAGAGAGGAAACCGTTCCGAGCGGGTGAATTATTGTACACCCCACATTTGGGGGCAAGGGCGCCCAGTCAGATGGCAGTGTCTCACATCCCCCAGCGTGAAGCCCCAGTCCCCCTCCCTCCGCCTGGGTTGGGGACCCCATGGGGCTCGGCAGCTTGGAACCTGGGCCGGGGGCTTCCATCCAACCCCGATCTTCCTGAGCAAGGACAAAGATGGAGGGCAGCAGCTCAAGCTGGCCAGGCGATCCTGATGAAAGCAGGAAGTGTTGACCTGGGCCCTAGAGACGAGGTGGTTTTGTCACGTTTTCTGTAAAATCTCCAGCACCTGGAGTAATAGGCCCTCAAAATGGGCTTCAAAACGCATGTGTGAAAAACTCACACTCATCTACTTAGGTTCATGCATTTCCTCTGCTCAAAGCACAGTGATGCCAAGAGCATGTTTGGAGCACAGGTTGGCAGCCCAGTGCACGCTGGGCACGAGAGTGGCCGGCCGCTGTGACGTCATGCGGTGATGCGGTGCACAGCGTAGCTCACTGGAGGGTCGTGTTCCTGGGTGGCTTCCTCGCCCAGCCTGTGTTTTACGTAGCAAGGCTTTTCCTCTTGAAGTGCAGGACTGGGAACGCCGTCACCTCGCCATCTGCACTGACATGCCCTGGCCTCCCTCTTGGACGGGAGAACTGTGCGTGGCTGTCCCCACGGGGAGCACCCCACTCCCCGCCCCGCGTCTCAGCCAACTGCAGCACTCTCAAGCACTGTCAAGGTTGCCGGTGTGATGGTTCATGGGGTGCAGCTTCCTCAGAAAACACGCTCCCCACGCCTCAGGATTGGGGAGGCCGGGGCCTGCCCCGATGGGTCCAGGGGGTCACGTCAGGAGAGTCCGAATGAAAGTTTGAGCTTTCCTCTCGGTTCTCTCATCTCTTACTGTCAGGTCAAAGAGTGGTTTTTGTTTATTTCAGAAAGGCGCACGTCTTTTCCCTTGTGAGAAAAGACTACTACTTCTGCTACCCCTGGCTATTTTGTGGGTGAGCTCTAGTCACCCTGAGTGTGATCGGGTCTGCTGCTGTGGTACTGCCGAGCGTTGTTACACATGCCGGTTTCTGTTCAAGGCAGGGCTGTCTGCGGAGGAAGTGTATGCAGACTGTTTCTTTGACTTCATACAATAAAATTAAATCTAATAAGTCATTCCAAAGTGTGCTGTGGGAAAAGGCAGACTTGAAGATTTTTGAAATCCAAAAGGTACACATCTAAATATCAAAAAAAAAAGGAAGAGGAAGGAGTATGTGCCTATTTGGTGCCTGAGGACCTGAGAGCCAGGCGGTGGGATGCTGGGGTGGCTGATGAATTACAGGGAAAATTCAGGAAGGCAGGCGGCAGCAAGGGCCATCACAGCAAATTGCCACCCACCTCCACGCCCCCAGCGCCACGGAACTGGCCCTGACAACATACTTCAGCAGAGGGAGCGAGAGACCCGGGCCATGCCGCCTCTGAGTGGATACTCAGAAGTTCGTCTTTGCATCCTTGTGACTTCTTGGTATTTGCCAGCTTCTTCACTTTTCCCCACTTCTCCTTTGAACGTTTTTCTAATGAAAGTCACCGTAGGTTTATTAAAATGGGAAAGCTTCCTTGAAATGCGTGTCTCTTAGATCAGGCTTAAGAAAGACAGTTCCTTGAATTTATCCTGCACTCTCTCTCCAAAGCGAGGTGGGGGTGACTCAGGGCTGTTGATAGAACCATACATAGGCGAATCGATTTGCTCTGTTCCTCAGAAGTAGTGGCGTCTTAGACAAGGAGGAGGCTCTTTCACACTGTGAACCTCTCCGGGCCAGCCCGGGCTCCTGCTCACCTCGGGTAAACAGTGCTCCACCGCAGCCCACGAGCGGCGCCCGGCTACACGACAGTACTCCCGTGTGCCTGAGGAAACTGCCCCTTCCTCTGGCATTGTGGTTCTGTGTATCCCTGGTGGTGAACAACGCTGTACCTGCCTTCTTTCTCCTCACTTCAGGATCTGACCCCAAGTTTTTACATTGCTTTTCCTTTTGTTTTCTTCCTCTTCTTCTTTTTTTTTTAATAGAGGCAAGGCAGCTGGACAAAGGGAAAGACAGGACTGGGCTCCGGTTTTTACTTTGCTCCAGCTTTCCAGGCATGAATAAGAGGCAAATTCAATAGCCATAACATTTTTCTCCCACGTGAAAAAATAGATTTTCCAGGAAACTATGAACAGTTTCCCCAGCTCCTACCCTCTCTGCATGTACCTCGCCTTCTCGGGTTGAGTCTTAACTGCCGTGAAAAGATTTCCTGAATCTGGCAGCCGAGAAGGAGTGGTGCGGGCTGGGGACTGAGGGCGTTTTGGGGAAGCGGTGACACAGCGCAGGTACATCGCTGTCAGAGACGTGACGTATTCATTCATAGCTTTGTCAGAGTCACCTTTTGGAGGGAGTGGGGGTTGTCTTCTCTCTCAGAAGAGGTTGCCATTCACATTCTAATTTGCTGTTAAATTTTGAAAAAAAACAAAACATACAAGAAAAGCATTTTTCCTTTTTTGGCTGCGCTGAGTCATTGTGGCACGCAGGCTTTTCTCTGCGCCTCACAGGGTCCTCTTTAGTTGTGGCCCCAGGGCTGAATTGCCCCGTGGCATGGCGGATCTTAGTTCCTTGACCAGGGATCGAACCCACGCCCCCTGCATCGGAGGGAGGCGGATTCTTAACCACTGGACCACCAGGGAAGCCCCGAAAGTCATTTATCTTTTTAGAATCTGTTTTCCTGCCCTAGAACTCTTCCTTCCCTCTCCCTTCTTCCCTGGGAAGTCTGTTCTCCTTGTCTCTGCCTCAGGACTCTGCTCTGTGCCCTTCTTCAGGACAAAGGCTGGGGCCTTCCAGAGCCAAGGGGGACAGTGTGCTGTCCAGACTCCCCCAAGAGGCTGCTTGCAGCATCTCATCCTGGCTCCTCGTGGCTCCCATTCACAGTGAAGCCTGAGTTCTGGTTTCAGCTGTTAGCCCATAACTCTATACATTTGCCAGAGGTCATTTGGTTCTCACCCCTGAGTAATTCAGGGATGACAGTCAGGAAGGTCCCTCGGGGTAGATTAGGACCGAGTTCTGGCGCTGTCAGCGGGAGACATTGGCCACCTGTTCACTTTCAGGCGTTTGTTTACCCAACTAAGGGTCTTCAGCCACCTCCTTTATCGAAAGGGACTGTCGGAAATGTTTTTTTGGCTTGTTGCCTTCTGCTCAAGTCCAGGTAATATGTCAATAAGCAGGCCTCTGTAGTTTTCCAGATTTATTAAGAAATAATGATGTGATCCCCATAAAAGAGATTCTAAACGAAGCCTATGTACATGTATCCGGGAGGATGAGAATTGGTGGTAATGTCACCCTTCTGTCCCTCTAATGTCATAGAGTCCCCTTCCTTCCGAATTCCTGAAAGGTTAGGAAAACATTCCCTTTCCTGTGACCAAGTGTCACTTCTCCTTTATATCTGGTTAGCCAGAAGAGAGGCCAATATTATGCATCACAGTTGATAGAATAATGTTTCTGGAAGAATAAAAAGCTTACCTCTATATGTCCTTCTTTTTACAG
Seq C2 exon
CGTTTCTGAGGTGAAGATGGAAGACATTTTGTCTGTTCTGACAAAGGATGATTGTTTTAAAGGGAGACGAGGGGGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530:ENSBTAT00000042916:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(26.7=42.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development