HsaINT0046153 @ hg19
Intron Retention
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135501051-135505790:-
Coord C1 exon
chr9:135505651-135505790
Coord A exon
chr9:135501133-135505650
Coord C2 exon
chr9:135501051-135501132
Length
4518 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGTGCCCTTCCTTTTACAGCGT
3' ss Score
13.43
Exon sequences
Seq C1 exon
TACAACGCTCCATCTTCACCTGCAGAATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
GTGAGTCAGAAACCTGAATGGGGTTTCGGCTGGTCTCACCTAATTAACTTTCTGTCGCTTTTTACAGTGAATGGGCCTTGTAAGCTGACGAAGAGCCATTAACCCTTGTGATCCCTAAATGAGTCCCAGAATAGCCAGTGGCAAAAACTAAAACCTTTAATATCCTCAGCACATGACAGTTTTCATTGCGTTGCCAGACTAAGTCATAGGACGATGTGTTGTACTTGGTTTTCTTTTAGAGAGCTGCGTTTCGTTTCTCCTGCTGCAAGATAAGTGTGCACCATCTTCGCAGCTTCTGAAAGGACTCTTATTCACAACTTTTATTTCTTGCAATTAATGGTTTGTATCTTCAAAGTTGATTTGTCTTTTAAAGAAATAATGCTTTTTACTCATCACACAATTTCCCTCCCCCAGGAAGATGAACCCAGGGGAAATGATTTTGAGGCAGTTGAAATCCACACTACACTCACAGCCAGGACATTCAGCTGCCATCTTGTGTGTCACAGTTCAGCACCTCATACCTCTGCGTAAAGCCCTGGATTCTAGACTTGGTGTGCCATGAGCACACAGCCCAGCTCGCTGTAAATGGGATAGTCTTATTTCTTTTTCCTTGCCCAGCCCTGTGTTTTATGTAAAACATCAAATAAAACTGCAACACTTTTCTCCCCTAAAGTACAGTGCTAGAAAAAAGCACTACGTTCTTCATTGGAATGAAAACATCCTAGCAGGCAGCCTGGGGGCCTGTTGTGGGGTGCAGCCCACTCAGTTGCAGGAGCCGTGTGTGGCTGTCCCCACCACACCTGCCCCGTCTCCCATCCGCAGAACTCTGCCTCTCATGCTAGTAAGACTTTTCAAAACTCTTTCAAGGTTGTTAGTGTGAACACTTACGGACTGAGGCTCATTCAGAAAACATGCTGTGTGTCCTTCAGTGTTGGGGGAGGCAGGAAACTACTCCTGGTTGTAATGTCAGGGGGCCAAAATAATAGTTTGGGTTTTCCTTTCTTCAGTGTGTTCTTTATCTTAACACAATCTGTCAGTTGAAAGAGTGGTTTTTATTTGTTAAGGAAGATGTGCATATTGTATCTTATTAGTGAAAGAAGTCTCATATAGATCAGTCAGTCACTTTTCACCCAGCGCTGCTTCTCCGGCTGAGTTCTGAGCTCCCTCAGCTGGAGGCTGGCTGGCCTCTCTTTGCTGCCCTTTCAGCATCGAGGCTGACACCCACCAGGGCGGGTGTACCAGGAACCCTGGGGAAGGTAAAATGCAAGCCCGCTGGCGCAGCCAGTTTCCTTTTCCTCCCTGACCCTGTTCTCACAGGCTGGGAGCCCGTCATAATGCTGCTGGTGGCTGCTTTTCTCTGTCATAGGAATTTGTGTACATGCAGAAAGCATCTTCAGAATTTTGTGTTGTAACCCCACAATAGAAAATGTAGTCACCACACCATAACAGCCTGTCAGTCGCTTCACACTTCTTTTCCTCTTCCTTCCATTCTAGAGCTACAAATTCCATTTTCCCATTCCTTCCTGGCCGCAGCTCTCTGGATGTTCCCCCATGCTCGTTCACTTTAACATGACCTCTTCCTAAGAAAAATGAGTGACAGCAGTTGCAGAGCCCAATGATAATTGTCTAATGCCAGAGTTAACAGCAGAGGTGCCTCTCTCTGCTCTCTTCATTTTTCTCTAATAACACATTCAAGTAGATTGCTATGAAGGGCTCAGATATAAAGCTAAAATTGAGAAGGGAAAACAGTGATTAGCAAAGGCACGAAGTATTAGGGAGTCAGGTATATTTTAAAGACATAACAAATACCATCATCTGCTGTGATGATCTTGTCTGGAAAAAATAGTGTGCCCGCATTTACGTGACTCCCTTTTTAATCCCGCATTAGAAAGGAGACAACTCAGTGATAACGCCACCTCTTCTGAAAGGAGGAAGTAGGTCTTTTGGGGAGGAACTCTGCAGGGTGGTGGAAGAGCATTTGCGTGAGGAGGGAGGGTCCTTGCATGAGCCCCACTTCACTGGCGTCGGCTCTGAAAACTCACTTGTGAGGGGCCTGGGCCTGGACTGCTGCTGCCTCGTGGGTGCACTGTAATCAACTTAAACAGACATCAGAATCTGGGTTATTACGTTGCAGTCATGCATTGTTCTTCCCAATTTCTGTTTGAGGAAAGGCCCTACATTGGCTGTATCTATACATGAACTGTTTCTTTGACTTAATGCAAAACAGCAACAACGACAACAACAAAACCCCTATTAACTAGTTGCAAAGTGCGCAGTGGGAAGAAGCAGACTGGAAAGTTTCTAGAATCCAAAAGGTCGACTCCTAAATATTTTTTGAGGAGGAAGCATGTGCATGTTTCGTGCCTGAGAACATGAGAGCCAGGCAGAGGGGCGTTGGGAGGGCTGAGGCACCACAGGGCAGATTGGAGAAGGCAGGCCGAGGCTCTCGGCAGCAAGGGCCAGCACGACAAATGGCTGCCCGCCTTCCTAGATCGAGCACTGCGGTGCTCGCCCTAGCAGTTGAATGGAGCAGACAGGGCAAGAGACAGGTTCCTGGGCCATTGCCACCTCTGTCTAGATGCTCAGAACTTTGCTTCTGCATTCTTTTGACTTCTTTGTATTTGTCAACTTCTTAACTTTTTTCTGCCTCCCCTTTAAATGTGTTTCTAATGAAAATCATCATTGGTTTATTAAAATGTAAATGCTTCATCAAAATGTGTATTTCTTAGATCAGGCATAAGACAGTTCCCTGAATTTATTTATTTATCCATCTCGTTTCATACTAAGGTGAGGTGATTCAGATCTGTTGATGGACCCATAAATAATCATAGTAGATTTGCTTTGTTCCTCAGAAGCAGCAGTTTCTTAGGAAGAGGAAGAAGGCCCTTTTAAACTGTAAATCACTCCCGTTCCCTCTCAGCTCCTGTTTGCTTAGGGTGTGTGGTTCCCCGACGTCGCCATGTGGACACAGCATATGAGCCACACTCTGGCTGGAATATCAGCACACGCATTTGAGAACACTGCCTTACTGTTCTGTGGCATATTTAGCTTTTTCTGTTCCTGACTGCAAACGGCATTACTCTTTTCTTTCTGCTTCAAGATTTGACTCCAAATTCTTGCATTTCTTTTATTTTTGTGTTTTTCCTCTTTTTTTCTCAAGAAAAAAGTGATGAATAGAAGCAAATCAGACCAAGAAAAAGATGGGACTGGGCTCTGTTTTCACCTTCCCTCGGGGTGCCAGGCACAAATGAGAGGCGAGTTCAATACCCATGCATTGCTCTCTCCTATGAAAAATAGATTTCCCATGAAGTCAGGGCACTCTCCCTCTGACTCCTGCCCTTTCAGAGCATGCTCTGCCTCCTCTGGTTGACTCTTTGCTGCTGTAAAAAGGCTTCACTCATCCATAGGGCTGTGAGTTGGCAGCAGAGAGAGGATGCTGAGGGGTGAGGGCTGGGGGTGTGCAGGGAGATGACACATTTCAGGTAAATCGCTGTCAGAGACGTGGCATTTTCATTCATAGCCTTGTCAGAGTAACCTTTGGGTGAAAGGGGGAGAATTGTCTTCTCCCACCTAAGAGGTTGCCATTCATGTTTTAATTTGCTGTTACATTTTCAAAAAAAAAAAAGAGCATACAACAAAATCATTTGTCTTCTTATGATCTGTTTCCCCCTCAGAACTCCTTCTTCTCTTTCTGTTTCTCTTTCTCCCTGGGAAGTATCCTTTCAGCAGCTCACGTTTCTTCCTTCATCTCTGACACGCAAGTCTCTCTTTGCTCCCTACATTCAAATGCTGTGGCCTTGCAGTTGATTGGATGAAGCGGAGGCTTTCCAGACTCCACTGCTAGGCAGGTCTGACTGTTGTGTTCTGGCTCCTTGTGGCTTCTGTTCCTGAGTGAAGCCCAAGCTCTTGTCTCAGTGCTTGGCACACAGCTCCGGCTTCGTTAGAGATCCTTTGGTCTTCACCCATCAGTAATTAAGAGATGGGGGAGTGAAGCTCCTCCAGGGTAGAAGAAGAAAGGCCAGTGCTGCTGGGACAGGGCTTTGTGCCCTCGTTACCCTCACAGGGGTGTTTACCCCACAGTGGAGGATGTTTGGCCACCCTTTTCTTCCTTTTTTTTTTTTTTTTCCTCTTCAGTATAAACTAAAGAGACCAAAATGCTTCTATTTCATCATCATCTGCTCAAATCAAGGGAGTGGATCAGTGAGTGGGCACACTTATTTGGTATTCAAGATTTATTAAGAAATAATGACATAATCTCTATTAAGGAAATTCTAAATGTAGCCTATTTTAAATTCATCAGAGAGGAAAGAAATTGTCAGGAATATCATCCTGTCCCTTTAATATCATAGAGGTCCCCTTCTCAATTCCTAAGGGTTTAGGAAAATATTTCCTTTCCTAGGAAGGTGTCACTTCTACTTCATGTCTAATTAGCTCAAGAATAGGCCAGTTTTGTGCATCAAGGTCTTGGGTGTTTTTGAAAGAGCAAAAAGTTACCTTGCTGTGCCCTTCCTTTTACAG
Seq C2 exon
CGTTTCTGAGATTAAGATGGAAGATATTTTGTGTGTTCTGACAAGAGATGATTGTTTTAAAGGGAAACGATGGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-DDX31:NM_022779:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(15.4=25.6),PF139591=DUF4217=PU(12.2=15.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)