GgaINT0125444 @ galGal3
Intron Retention
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7246368-7253694:-
Coord C1 exon
chr17:7253555-7253694
Coord A exon
chr17:7246450-7253554
Coord C2 exon
chr17:7246368-7246449
Length
7105 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TTTTGTCTTTGCTACTTCAGTGT
3' ss Score
7.24
Exon sequences
Seq C1 exon
TATAACGCTCCAGCTTCACCTGCGGAATACATCCACCGGATCGGGAGGACGGCTCGGATTGGCTGTCACGGGAACAGCCTGCTTGTCCTGGCGCCTTCGGAGGCAGAATATGTCAGCTTGCTGGCTTCTCACAAGATTAA
Seq A exon
GTGAGTCAGAAACGCGAACAAAAGTTTCAGCTCATCCTTGCTAATTAACCTTCCGTGGCACTTTCAGCGGGACTGTAGCTCGTGCAGGTTTTAATAAGAATTTATTAATTCTTGTGATCCAGAACCAGCCCCAGGCTGGCAAAAGGAGAGGGGGATGCGTGTGGAAAATCATCCGGCTGGCAGATTGTGTGAGCAAGTGTGTGTGCATGTGTGTGTGGTGAGGGGCACGGAGGAAATGGGAGTTGGAGATCCTCTGCGCTTGGTTGTTATCTCCACGGCCCTGGGTTCAAGTTGTGGCTATGCGGAGATCACAAGTCAAATGAGCCTGTCAAATGCTAGCTGGCCATCTGCCTGCATAGCACCATATTGTCAGAGATTGTGCTTTCTCTTCAGGAGAGATCCGGCAAAGAAATAGCTGGGGAGCTGTGGGTCATATCTGGCAGGTAATTGGCCCAGATATGTTGTGTGAGTGCCTTGTGGCAAAAATAGAAGAGGTTTCTATGAGTGGTGAGTGCCCAGTATGGTCCTGGAAGGCAAAGGGGTGGGGGGACTCAGCAGACCAAAAGCAGGGTGTGTTTCCAGACTGGCTGGGAATGCTTCTCTCACGCCGGCTGTGGCCAGGACTTGGGAACAGGCAGTAAGGAGAGCAAGCCAGGCTCATGGAGGAGCTGACTGCTCTTTGGGCTGCTCCTCGATGGCTGACATGCTATGATATTTCAGTCCAGGTCTCCTTGCACAGTGGTCCCTTTGTGGGGATAAAAAACCTTCAGTGCTGCTAGCAGGGAACACTGCCAGGTCCCAAGCCTCCCCAGCAGGCAACTGGAGATGCGACTCCTCTTGCTTCCTGCATTGCTGTCTCTTTGGCATTTCAGAGCAGCAGCTGAATAGAGTCCCTTTAGTGTTGTGCTAGCGTTGATGGAGTCCTGTAAACTCATGCACAGATTAGTTCTCTTTTATTTGTTGTGTTTATGTCGGGTGGAGCTGCTTGGAGTCGAATTTGGTTTTGCTTCCTTGAAACAAACAAATGTTGGCAGTAAATACGGGCTTATTCTAGGCTGCGAGCCATTTAGTGGTCTAACAAAGAGCCATCCATCATCCCAGGTAACTATCTATTAAGCAGACACCAGCAAGACATGGAGGGCTAAGCTGACAGGGTTTTTTTTCATGTAACAAACAGCACTGACATTTAAAGGTGAAATCCCACATAATTGTGAATTTTTAACTCCAAGTAGAAAGTTGTATTTTTCCATTTTATAATATTTGGGAAGGGTTGGAGGAAGGAGAGGAAAACTTCCCTCTTTTTTTTTTTTAAATTGTTTTATCCAATTTTGTTGGATTTTTTTTAACAAGTTTAAGAAGCAGTGTCACTCACTCACACTGCTAATTATATCTGCTGAGAAGACCTGTTGTTGAGCTAGCCACCGTTCTTCAGCAATCTAGAAGACTGTGCTCAGTGTGTAAGGAGAGCTTTATGTGAATATTTTTTCTCTGCTTCTCAAATCAGTACATCCAAACAACTCCAGGGATTGTCTTCTCTTGTTTGTTTTATGTTCGTCATAAAACTTGCTGCCCTGGAGATAAGGGACTGCCAAAAAAAGGAGTGTGATTTTTCTGCCTTTGACCTCTGTCTTCAGATGGAAGAAAATCAGTGTCTAATTGGCATGGGTGGGCGATTCGGCCTGTTCACAGTCATGTGTCCTCTGCTCTTCCTACGTAGCAGTGCACGGTGTGAGAAGGGACAGCGGCAAGAAGAGAGAGCTGATGAATTACAGAGAAGATGCAGGAAGGCAGCTCGAAGCTAAAGGCAGCGAGTGCCATCAGCACAAATTGCCATTACTCTTCATAAACAGAGCATTATGGTGATAATCCTGACAATTTAATTCAGTGCGAGGCTGAAAGACAGCATGTGTTGGGCTGTCACCGATCCTCTTCAGCGCTGATAATTTTTTCCCTTTATCCTGGGTCTTCCCAGCTTCTGACCTGGGCTGCACAAGTTACCAGAATTTGTGTTGTTTTTAATTCTTAGTCTGTTGTTTTGTGTTGGGCTCCAGTGTGTGCTGTGAATTGCTTTTAATTTTTTTTTTTTCCTTTTATAAATGAAATTCCCGCGAGGTTTATTGAAATGTAAATACTTCATAAAATATGTATTTCTAAGAAGACAAAGCGTGAGACAGGGCCCCGCCATCTTCAGCTGGTGTAAATGAGTAGTGCCACACTGATGTACAGGAGGTGAGCATCTGACCCAGAGTTTTTCTTAAACCCCTCCACCCACCCCAGCATGCATGGGAGTAAGTCCAGAAGTGTTGAGAGTCGGAAGTAATGAGAGCAGACGTGGCTTTGTTCCTGGATGAAAATCCACTTCGGAATTAGGGATGACTGCCTTTGAAATTGGAAATCGCTCGCAATTAATTTTCACCAGTACCTGAAGCCTCTCCTTGGCTTCCACTGTGGAAAAGCAGCGTTAGCCTTTGCCAAAACGATCTCACTTTGGCTCTGCTGAGATCAGTAATTCCCAATGGGTCTCAAGGAAGCTGTGTGCCTCTGTAACTTTCATTTCAGTCTTTGTGTGGCTTGAAGTTGTGGCTCCTCTGCCCAGCTGTACATACATGCACACTGACGTTTTGTGTGCATTTCCCCATTTTTCTTTTTTTCTAAAGGTTAGGCTCCAAAACATTCTGTCTGAACAGACCTAACACGTTTTCCTCTATAGGGAAGAGGCAAGAAGCAGCAGAAAGTCACTGAGGTTTACTTATTTATTTATTTTTGCTTATGTCTCTTTTAGTTCCTTCAACTGCAATCTAGCAGCGCCTGCCTCGACAGCTATCAGATAATTTCTTTATCTCCTAACGGCAGCCTAACTAATTTATAAAGGAGAGCGCATCACCGTGAAGGCACGAGTCATTTCTCTCCCTTCTCCACGTTGTGCTCCCCCCTCCCCTGCTCCCCTCACACACTGCTCCCCGCTGAGAACCAAGTTCACATATCTGTTAGGCTGCGAGCTGGCAGCGCGCCGCGAGAGGGGAGGATCGGCGAGGGGGTGACATATCAGACAAATCAATGTCAAAGGTTTGACGTTTTCATTCATAGCTGTGTCGAAGAAACCTTGGGGGGATGGGGAGGTACACTTTTCACTTGCTTAAGCGGTTGCCATTTATGTTTTAATTTACTGTTACACTTTTCAAAAACAAACAGAAACCCTCAGTTGTCATTTTATGCTCCATTTCCCTTTCTCCCCATCTCTCCCCCACCCCTCTCTGCATCTTCTGTGGAGGAATCTGTGCACTGAGAGTCCCAGCTGCACAGAGATGGGGCTCCTCTCCCATGTAGGATATCTTATGGCCACATCAGCCCGTACCTCTGAGGCTGGATGACTCTTTTCTGCAGACCATCTCATTTCCTTTAGTTACGTTGTGATGATGAGCCATGGAGGTTGGAAGTGCAGGTTGCAGGAAAAAGGTATTTGTTGCTTTATGTGGAAAGAATGCAGCATCCTGTAACAATATAGAACATGGCAAAGAGTTATTCATTCCTCCTTATCAGGAGTTTTGAGATCTCTGAGTGAAGAGAAAGGGAAGATCCTTGTTGGTACAATTTGTTTCTGTACTTTGTGGAAAATCATCAGTGCCTTCTTTCAGAAACTGCCTGCCTCCGTCTGACCACGTGAGATCTGGGAATCTGAGGAGTGTTGGGCCGCCAAACTTTCTCTTCCTTACCTTCTAGTAAACCCCAATGAACTCCTTGGCTTCCGTGCAGTATTTATGATTTACTCTGGTATAAAAAAGGGAAAGAATCTCTTTTCTAGAGATGACCTTTGCCCACTGCTGAAATGCAGCAACTCAAAAATTTGGACCCACAAACTTCAACTTTCGTTATCTGAGTAATTCCCTTGGAAATGGGACCCAGTTTGGATGCAGCCTTAATATTAATTGTGTGAAGCTGCACAGCTGTTCCTGTGTTGTGTCACCTGGTGTGTGTGTGCCCCACAAGACAGTGTTAAAGAGGACAAAGGATATCTAGTCTCCTTTACGTGCATCTCTGAATGGGACCACTTGCAAGCTTTAAAATGAAGGTGGCTCTTAAGATTCATTGGTATCGAGGCCATAGCAGTGGGCCAGCAGTGTCTTGCAAGCAGGACTGGAGAGTAGTCATCTGGTTGAAGCTACAGGAAGAATGAGTGAGTTGACAGAATGGAAATAAATGCCAAGTGTGAAACATGGCTAGGGATAGCTGACTGAGTCACCTTTATTTAAAATATATATTACAAAAAAATAGAGTGTTTTAAGTCCCTAATGTGCAGGGCTTTGGTTTTACACTTGTGCCAGGGGAGGAAGAGGGTGAGTCCTCAGAACGGTAAAGAAAATCAAAGTGCGTGTTTGGTATTGGAAGTGGCTTTTGAAGCTTTAAATGAATGTGAGAGCATGTCCATCAGGAGGAGTGCTTCTGGGCTCTGAGTCCAGCAGTGTAGCAAGAGGTTGGAGTGACATAAGATCTTGTGGGAGTGGGGTATGACGTGCCTGTGTGGAAGGAAACTCAGAGAGTTGGCTTCCTAGGAGAAGTTCCTTGGGATCCTGTTGTGTCCCCATAAACACTTTGTTTCTTTGGATGAGGGTTGAGTATCATCTCCCATCTTGCCATCCATTATCAGCCCTTAGTTTTTTATGCACTATTTTTTTAAAAGCAGAATAAATTGCAGCGGTTTTTTTTTGTCTTTGCTACTTCAGTGTCTCAGAGATAAAGATGGAGAAGGTACTATCCAGCCTGATGAAGGACAGTCGCTTCAGGCTGCACAGACCAGGAAGCAAGGTGAGTTATTCTGCTGATTTGGAATTGCTACCATTGTCATTTACCAGATAAACATCATAAATATTCCTCCCTTAGCTTCCATCTTTGCGGTATGATGGTTGGTATGTCCATTACGTCGGGCAATGCAAGTAGTCATAGAATTGCCTTATGTCACAATTGTCCAGTCTTTAACCTGCTGTCCAAAAACCAGCTCTTTCTAACTCTTCAACAAATAGTTGTAGCAGACAGTAAAGCTTTCTGGCTGCAGAAGTGTTATTTTTTTTTCCCACAGTGCTTCTCTTCTCGGCTTTTCTTCACTGAAACTGTTGGAGATTGCAAATAACATAAAATCACTCCAAAGAAATGAGCAAAATGTATTTGGTGATGTGCTGTGTAGGCTTTTTAATTATTACCTGTATTTACTTGGAGCCTGAAACAAAGCTTGCTGGGCTGACAGTCATCTTTTCATTGATTTCTGCAAACTTTGGGTCTGCCATCAGTTTGCTAATTCACAGCATTCAGTCATTTGCAATTGATGGTGAGGTGTTTCTGCATTCTGTGGAATTAAATCCTTGAAGAACTTCCATTTTGAATGGAAGTCAAGAATGCTTCAAGCCTGATGCAGAATGCTTTTTTCTTTCCTCTTGTTGCAGTTTTGCCTGTTTGTTCTTTCTGCTTTAACGTATGTGAGCCTGCNNNNNNNNNNCTTGGGGGGATGGGGAGGTACACTTTTCACTTGCTTAAGCGCCAGCCATTTATGTTTTAATTTACTGTTACACTTTTCAAAAACAAACAGAAACCCTCAGTTGTCATTTTATGCTCCATTTCCCTTTCTCCCCATCTCTCCCCCACCCCTCTCTGCATCTTCTGTGGAGGAATCTGTGCACTGAGAGTCCCAGCTGCACAGAGATGGGGCTCCTCTCCCATGTAGGATATCTTATGGCCACATCGGCCCGTACCTCTGAGGCTGGATGACTCTTTTCTGCAGACCATCTCATTTCCTTTAGTTACATTGTGATGATGAGCCATGGAGGTTGGAAGTGCAGGTTGCAGGAGAAAGGTATTTGTTGCTTTATGTGGAAAGAATGCAGCATCCTGTAGCAATATAGAACATGGCAAAGAGTTATTCATTCCTCCTTATCAGGAGTTTTGAGATCTCTGAGTGAAGAGAAAGGGAAGATCCTTGTTGGTACAATTTGTTTCTGTACTTTGTGGAAAATCATCAGTGCCTTCTTTCAGAAACTGCCTGCATCCGTCTGACCACGTGAGATCTGGGAATCTGAGGAGTGTTGGGCCGCCAAACTTTCTCTTCCTTACCTTCTAGTAAACCCCAATGAACTCCTTGGCTTCCGTGCAGTATTTATGATTTACTCTGGTATAAAAAAAGGGAAAGAATCTGTTTTCTAGAGATGACCTTTGCCCACTGCTGAAATGCAGCAACTCAAAAATTTGGACCCACAAACTTCAACTTTCGTTATCTGAGTAATTCCCTTGGAAATGGGACCCAGTTTGGATGCAGCCTTAATATTAATTGTGTGAAGCTGCACAGCTGTTCCTGTGTTGTGTCACCTGGTGTGTGTGTGCCCCACAAGACAGTGTTAAAGAGGACAAAGGATATCTAGTCTCCTTTACATGCATCTCTGAATGGGACCACTTGCATGCTTTAAAATGAAGGTGGCTCTTAAGATTCATTGGTATCGAGGCCATAGCAGTGGGCCAGCAGTGTCTTGCAAGCAGGACTGGAGAGTAGTCATCTGGTTGAAGCTACAGGAAGAATGAGTGAGTTGACAGAATGGAAATAAATGCCCAGTGTGAAACATGGCTAGGGATAGCTGACTGAGTCACCTTTATTTAAAATATATATTACAAAAAAATAGAGTGTTTTAAGTCCCTAATGTGCAGGGCTTTGGTTTTACACTTGTGCCAGGGGAGGAAGAGGGTGAGTCCTCAGAACGGTAAAGAAAATCAAAGTGCGTGTTTGGTATTGGAAGTGGCTTTTGAAGCTTTAAATGAATGTGAGAGCATGTCCATCAGGAGGAGTGCTTCTGGGCTCTGAGTCCAGCAGTGTAGCAAGAGCAAGTGACATAAGATCTTGTGGGAGTGGGGTATGATGTGCCTGTGTGGAAGGAAACTCAGAGAGTTGGCTTCCTAGGAGAAGTTCCTTGGGATCCTCTTGTGTCCCCATAAACACTTTGTTTCTTTGGATGAGGGTTGAGTATCATCTCCCATCTTGCCATCCATTATCAGCCCTTAGTTTTTTATGCACTATTTTTTTAAAAGCAGAATAAATTGCAGCGGTTTTTTTTTGTCTTTGCTACTTCAG
Seq C2 exon
TGTCTCCGAGATAAAGATGGAGAAGGTACTATCCAGCCTGATGAAAGACGATCGCTTCAGGCTGCGCAGACCAGGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534:ENSGALT00000005588:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(26.7=42.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]