RnoINT0045999 @ rn6
Intron Retention
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7457910-7462959:+
Coord C1 exon
chr3:7457910-7458049
Coord A exon
chr3:7458050-7462877
Coord C2 exon
chr3:7462878-7462959
Length
4828 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCTGTGCTCTTTTCTTACAGTGT
3' ss Score
11.03
Exon sequences
Seq C1 exon
TACAGTGCTCCGTCTGCACCTGCAGAGTACATTCACCGCATTGGAAGGACTGCCCGGATCGGCTGTCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAGTATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
GTGAGTCAGAAACCTGAAAGGGGTTTCAGCAGATTTCACATAATTAACATTCTGTCGCTTTTTGAGTGGATGGGCCTTGTAAGCTGCAGAAGAGCCATTAACCCTTGTGATCCCTAAATGAGTTCCAGAATAGCCAATGGCAAAAACGGAAACCCTCAGTACCGTTCACACCTGGCAGTTCTCATTGCAGTGCCAGTAACTTACAGGGCGTCTGTGCCCCTGGCTTTTCAGCTTTCAGTAGGAGGCAAGCCCTTAACGCCGGCTTCTCAGAAGCCTCTTCATTCTCAATTTCCATCCTTGCGGTTAGCATCTTAACAGCTTCAGTGTGGTTTGTCTGAATAGAAAGAAGAATGTTTTTGCTAAGCACAGACTTTTTCCTTCAGGAAGGAAAGGGATCTTCAGAGTAGTCGAAACAAGACACTGTCTGCATAGCTGCAGCCAGGATTGCCCAGTTTCTGTCTTGTGTGTAGTATTGTCAGATAACTGGCCTTGTGCCCCTGTGGGAAGCTCACGTGGAAATGGTTGTTGGCCTGGGCCACTTATAAGGACTTGTCCTGCCTTCCATAAATCCTCTGATTCCTGAAGTCACAGACTCTGGCAGTGAGCTTGTAAAGGCATGCAGTGTCTGACACGGGTCTACTTTTAAGAGTTTCTTCTGCTCAGACATGGCGGGATGGCGGATGCATGTCTGTCTGGAAGCCCTGGGAGAGCCATGTGTCTGCCCAAGGTGCTGGGACATGATGCCTGCCAAGCCCACAAGTCTTGTTGGCTGCTCGGGTGTTCCTGAACACGGATGCTCTATAGCGGGCGTGCGTCTGCATATCTCTGTGGAGCTGCCAAGTGGTTCCCTGTCTTTTCCTCTTTGACCAGCCATACATTTTATGTAAAACATGAAACTCCAAGGATATTCTCTCCTCCTTTACAAAGTTGTAAACACTGCTGGGGACCTGGTGTGGAGATGCCAGCCCAACTGACTGCAGACTTGCAAAGCTGTATGTGGCTGTCCCACCAACTCTGACCATTTCCCAGCAGGCAGTACTCTCTCTGACTACTGAGATTTCTCAGAACTCTTTGAGGATTGTTGGTGTGGGCATCTGTGGGCTGAAACAGACAGAGTGCACCAGACAGACAGAGTACACCAGCTACCTCTGATATGGAGAGGTAGACACCTATTCCTGGTTGTCATTCAAGTGGGCCTAAATTAAGGTAGCTTGGGTTTCCTTTCTCTTTGCCTTGTTCCTCGTCTTAACAGTCTGTCGGGCTGGAGAGATGGCCCAGCAGTTAAGAGCCCTGACTGCTTCCAGAGGTCCTGAATTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATAAATCTTTAAAGGAAAAAAAAAGTCTGTGAAGAAAAAGAATGGTTTTGTTCCTTGGTGCCCTTGTTTGCTCTCTCTCATGAGGCCATACTGGTCAGGTCATTATCTTTCCTCTCTGATGTGTCCAGCTGGATTCAGAGCCTTCCAACCTGGGGCTTATGGTGCTCCTCGTGGTAGTCCGCATCTGGGCTGCCCTTTTCCTAGGCTAGTATTCTTGGGGAGTCCTGGCAAATTGAGTTGGAAGCCTGTTGCTGGAGCTGGTCCTCAGTTTCCCCTGCTGATTCTCACCACAGCACCCTGTGCTGAGGGCCTGGAGCAGTGCAGTCGTGGGAAGGAATGTCTGCATGCCCCATAGCAGCCCATCTTCCTATCTCCTTAACTCCCAGCCCAGGCCAGCCAGGCCTGCTCACTCAGCCTTTCATTGCCTGCTCAGGGTGCTCACGGCTGCTTACTCTCTCACAGTCCACAGTAGCAATTCTGTTGGTCCCCTAAATAGGAACTAAAATAAACTCTGATGAGAAAGACTACATTGCAGGAGCTGAGCCGGATGGAGTTGGAGCTTAGCTGGTAGAGTGCTTGCTAAGGTGTGCAGTTCCCAAGACCAGTGGAAACTGAGAGGAGTGGTACAGTCCTCGAATCATAGTACTTGGGAGGTCAGAAGTTCAGGGTCATCAGCGAAGTTCAAGGCCAGCCTGGTCTACATTATACACTGTCTTAAAAAGTAAGTAAGTAAATAAGAATCTTTAAAACTTTTTAAAGTCACTACATTATATGTAATAGACAGAAATAGTCCAGGACGTTTTTGAAAATTAAAGGGAACATTAATCATTCAAAGGACAAGGCGGTAGAAGAGGGGTATGCGCTCTTGTGGGAGATGTAGAGTGCTCTCTTCACAATCTGCTCTAGCATAGTGGGCAAGGGACAGGAGCCCTGGGCTGTTGCCACCTCCATCTATGCTCAGAGCTTTGTCCCTCTGTCCTTCCGCTTGTTTATGCTGCTGGGTCCTTCCTGCTTCAGTGTTGCTAGGAAAGCCATTGCTGGTTTGTTAAAATGTACAAGCTTTGTCAGGACATGCCGGGTGTCCCAGCAAGACAGAACTATTTGGATCTGTCCATAGGACTGAACTAATCATGGTAGCTCTGCTCTGTTTCTCAGAAGCACTGCCTCAGGTTAGGGAGAACTTGGTGACTGCAGGTCTTTACCTAAAATTCCAGCTTGCTGATGCCTGACCTTGTGCGTGCAAAAGCGTCTTTCTTTTCTGGGACTGAATTGGTTTGGTGGTTGTTTAATCACTTTTCCTCCCCTTAGCTCTTTATCACATTTTCTCCTCTCTTTTAATATTTCACCCCCAAAATTGTTTTTGTTTTCTTTAACTTTTGAGACAGGGTCTTACTCTGGAACCCAGACTGGCATTAAACATCGCATGTCCTAAGCTAGCCTTAGGCTTGTGTCAGTCCTCTTGCTTTAGCCCCACATGCTGTAATTGTAGCTGTGAGCCCTCAAAACCCACTTCACAATTTATTTTCCATTAGTGTATTTGTCTCTGCCTGCCCTACAGATGACACATAGGAGTCATGTGAGACAAGTCCCATCCTCAGAGTCAGCCACCACATATATGTCTCTGTCCTTCACAGGTTGGGACCTGGAGAAAATGCTTCTGGGGGAAGGGGTGCCCTGCCCTTCCTTCTGTCTCCCCAGCCCTCCACTCCTGCACCTACCGCTCCCTGCTCTAGCAACGCCTCTCCTTCATGGGTCTGTGGATGCTCAGGGACGGGGGCTAGGCTTGAAGCTCAGGAGAGTTGACAGGTCTCAGGTGAGTGGCTGTCAGATGTGGCAGCTTCATTCACAGCCTTGTCACAGTAACCATTGGGGAAAGAGAGAACTGTCTTCACCCAGAAGAGGTTTCCATTCATGGTTTAATTTGCTGTTAACATTTTCAAAAAAAAAACAGAAAGAAAATATACAGCGAAATCACTTGTCTTTTCATGATCTGTTTCTCTCCCCTGGAGCTTCTCCTTCCCTTTCCTCTGGAAGATGAGCTCAGCCTCTCACATTTCTTGTCTCTAGTTGTGCTTCTGTGTTGCTCGCCAGTTCTAGAGCCATGATCTTGTATTTGCCAGGTGCATTGGAGCCTGCCAGACTCTTCTCAGAGGCCAGTCATGCTCCCTTGTTTTGATTCCTGCCTTCAGCAGTTTGCTTATGGCTGCAGGTCTTAGGGGATCATTTGGTCTTAGGTCCCTCAATGGTTTAGAGGCCAGAACAGTAAAGATTCTCTAGAGTAGAGAAAGAACAGAGGAGCTATGCACAGAGCTAGAACACTCACCACTGTCACTGCAGTCCTTGTCCACTAGTTATGGATCCTGCATAGCAGCCTGTGTGAAGTGATGTTCTTGCCTGTTCAAGTTCAAGTATCATGTCAAGAAATAAGCCTACTGTGTTGGTAACTACACTTTAGGATGAAGCAATGGCAGAGGGCTGGCAAGGCTGCTGACCGACTCCATACCCAGGACCACGTGGTAGAAATGACTCCTGAAGTTACTCTGATTCCCATACACAAGCCATGTTGTGTGTGTGCCCGTGTACACACATAAGCACGTACAAAGAAAAGGGAAGGAAGGAGGGAGAGAGGGAAGGAAGGAAGGAATAAAGAGGGAGGGAGGGATGGCAGAAGCCTAGTATGGTGATATTTGCTTGTCACCCAGCACTGGATGGAAGCAAGGGATGGAGGACAGCCTTGGTTCCATAGTGAGAGACCGACAGTTTAGGGCACATGAGACCTTGTCCCAAAAAAAAGGAAAGGAAAGCATGATGAGTGGGCAGATACAAGGAAGACCCCCATGCGAGGTAACCTGTCTTAGGCCCATCAGCAGGGGACACTGGCTGACTTGGCCCTGTTGCCACCTTTCCTTTTTTGAAATGCCTTAAGGCTTAAGAAAATTCTCTTTAATTACCTGTCTTTAATCCCAGCACTCAGGAGGCAGAGGCAAGCAGATCTCTGTGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCCACAGAGAAACCCTGCCTCAAACAACAACAAGAGGAGGAAAAGGAGGAGGAGGAGAAAAAAAGATTATCGTCTTTTTGACAGTTTTTTATTAACATTTATGTTGTGGGGGAGGTAAAAATATAAAAGTTGGAGGACAACTCTGGGATTCAGTTCTCTCCTTCTAGGTCCTAGTAGTTGAAGTCAAGTTGTAGGCTTGGTAACAAGCTCCTGTGCCAGCTGAGGTACTCACTAGCCTGCTCTCCCCTTTCTCAGATGTTGCTTGTCCTTAGTTCTCATTTCAGAATGGGTTGGTTTTATACATCAGAATCTGGGCTATCTCTGGGACACTGAAAAGGCTGACTTCTGTGCTCTTTTCTTACAG
Seq C2 exon
TGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040:ENSRNOT00000064323:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(27.0=42.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]