HsaEX0018924 @ hg19
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135487474-135505790:-
Coord C1 exon
chr9:135505651-135505790
Coord A exon
chr9:135493717-135493828
Coord C2 exon
chr9:135487474-135487642
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCGTCGCCCTCTCAGAAA
3' ss Score
8.6
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TACAACGCTCCATCTTCACCTGCAGAATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
AAATCCCATGCTGTTGGCCCCCAGGAAATCCGAGAGCGAGCCACAGTCTTGCAGACGGTATTTGAAGATTACGTGCACTCCAGTGAGAGGAGGGTCTCCTGGGCAAAGAAAG
Seq C2 exon
CTCTGCAGTCCTTCATCCAAGCCTACGCCACCTACCCCAGGGAGCTGAAGCACATCTTCCACGTCCGATCCCTCCACCTTGGGCATGTGGCGAAGAGCTTCGGACTAAGAGATGCCCCCAGGAATCTTAGTGCCTTGACTAGAAAGAAGAGGAAAGCACACGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.270
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(15.4=25.6),PF139591=DUF4217=PU(12.2=15.4)
A:
PF139591=DUF4217=PU(33.8=57.9)
C2:
PF139591=DUF4217=PD(64.6=73.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGAATACATCCACCGG
R:
AGGCACTAAGATTCCTGGGGG
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)