MmuEX6100038 @ mm10
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28881143-28892541:+
Coord C1 exon
chr2:28881143-28881224
Coord A exon
chr2:28886891-28887002
Coord C2 exon
chr2:28892379-28892541
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCATCACCCGCCCAGAAA
3' ss Score
4
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGTTGGTGAGATTAAGATGGAAGATATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
Seq A exon
AAATCCCGTGCCAGTGGCCCCCAGGAAATCCGAGAACGAGCCACAGTATTGCAGACAGTGTTTGAAGATTATGTGCACTCCAGTCAGAGGATGGTCTCCTGGGCTAAGAAAG
Seq C2 exon
CCCTGCAGTCCTTCATCCGAGCCTATGCCACCTACCCCAAGGAGCTGAAGTCCATCTTCCATGTCCGAGCCCTACACCTTGGGCACGTGGCTAAGAGTTTTGGACTAAGAGATGCTCCTAGAAACCTCAGTGTCTCTGCTGTGAAGAAGGCAAGCTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.263 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF139591=DUF4217=PU(33.8=57.9)
C2:
PF139591=DUF4217=PD(64.6=76.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTGAGATTAAGATGGAAGA
R:
TTTAAGCTTGCCTTCTTCACAGC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types