DreEX0026228 @ danRer10
Exon Skipping
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29127015-29131622:+
Coord C1 exon
chr5:29127015-29127099
Coord A exon
chr5:29129500-29129611
Coord C2 exon
chr5:29131427-29131622
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTTTGCCTTGATGTGTGCAGAGA
3' ss Score
5.88
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
TTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAG
Seq A exon
AGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCG
Seq C2 exon
CACTGCAGTGTTTCTTGAGAGCTTATACCACATACCCATCCAGTCTAAAGCACATCTTCCACATCCGCATGCTGCACCTGGGCCACGCTGCTAAGAGCTTTGGCCTGAGGGACGCACCCCAGGGCCTGGCCAGCTCCATAAGCACTAATCCTGCCAACAGCAAACACTCCAAGAAGGCCAAAGACAAAGCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507-'18-21,'18-19,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.348
Domain overlap (PFAM):
C1:
PF047579=Pex2_Pex12=FE(18.2=100)
A:
PF047579=Pex2_Pex12=FE(24.0=100),PF139591=DUF4217=PU(34.4=57.9)
C2:
PF047579=Pex2_Pex12=PD(53.9=92.2),PF139591=DUF4217=PD(64.1=45.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTAATGAAAGACGAGCGCT
R:
TGGCTTTGTCTTTGGCCTTCT
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]