GgaEX1019113 @ galGal4
Exon Skipping
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6594181-6611702:-
Coord C1 exon
chr17:6611621-6611702
Coord A exon
chr17:6605998-6606109
Coord C2 exon
chr17:6594181-6594284
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTCCACCCTTGCAGAAA
3' ss Score
11.04
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTCTCCGAGATAAAGATGGAGAAGGTACTATCCAGCCTGATGAAAGACGATCGCTTCAGGCTGCGCAGACCAGGAAGCAAG
Seq A exon
AAATCCTATGGCGTGGACCCTCAGGAAGTCCGGGAGCGGGCCACAGTCCTGCAGACACAATTTGAGAATTATGTTCACTCCAGTGAGGGGACCATCCGGTGGGCAAAAAAAG
Seq C2 exon
GTCTGACCTTCTCAAGAAGACCCATGGCAAACATCGCCTGGCTGAGATCTTGCGATCTGAATATTCCAGTGGGATGGACACTGGTGTATCCAAGGTCAAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534_MULTIEX1-14/15=13-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.105 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
PF139591=DUF4217=PU(33.8=57.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCGAGATAAAGATGGAGA
R:
TACACCAGTGTCCATCCCACT
Band lengths:
170-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]