RnoEX0026858 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7462878-7475230:+
Coord C1 exon
chr3:7462878-7462959
Coord A exon
chr3:7468620-7468731
Coord C2 exon
chr3:7475068-7475230
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCACCACCCTCCCAGAGA
3' ss Score
5.45
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
Seq A exon
AGATCCCATGCCACTGGCCCCCAGGAAATCCGAGAGCGAGCCACGGTGTTGCAGACAGTGTTTGAAGATTATGTGCACTCCAGTCAGAGGATGGTCTCCTGGGCAAAGAAAG
Seq C2 exon
CCCTGCAGTCCTTCATCCGAGCCTATGCCACCTACCCCAAGGAGCTGAAGTCTATCTTCCATGTCCGGTCCCTACACCTTGGCCATGTGGCTAAGAGTTTCGGACTAAGAGATGCTCCTAGAAACCTCGGTGTCTCTGCTGTGAGAAAGGCAAGCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040-'23-37,'23-34,24-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.263 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
PF139591=DUF4217=PU(33.8=57.9)
C2:
PF139591=DUF4217=PD(64.6=76.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTGAGATTAAGCTGGAAGG
R:
TTAAAGCTTGCCTTTCTCACAGC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]