HsaEX0018924 @ hg38
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr9:132612087-132625745:-
Coord C1 exon
chr9:132625664-132625745
Coord A exon
chr9:132618330-132618441
Coord C2 exon
chr9:132612087-132612255
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCGTCGCCCTCTCAGAAA
3' ss Score
8.6
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGTTTCTGAGATTAAGATGGAAGATATTTTGTGTGTTCTGACAAGAGATGATTGTTTTAAAGGGAAACGATGGGGAGCCCAG
Seq A exon
AAATCCCATGCTGTTGGCCCCCAGGAAATCCGAGAGCGAGCCACAGTCTTGCAGACGGTATTTGAAGATTACGTGCACTCCAGTGAGAGGAGGGTCTCCTGGGCAAAGAAAG
Seq C2 exon
CTCTGCAGTCCTTCATCCAAGCCTACGCCACCTACCCCAGGGAGCTGAAGCACATCTTCCACGTCCGATCCCTCCACCTTGGGCATGTGGCGAAGAGCTTCGGACTAAGAGATGCCCCCAGGAATCTTAGTGCCTTGACTAGAAAGAAGAGGAAAGCACACGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485_MULTIEX2-7/8=5-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
PF139591=DUF4217=PU(33.8=57.9)
C2:
PF139591=DUF4217=PD(64.6=73.7)
Main Skipping Isoform:
ENST00000372153fB13573
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGATATTTTGTGTGTTCTGACA
R:
CTTTTCACGTGTGCTTTCCTCT
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development