HsaEX0018923 @ hg38
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr9:132612087-132630403:-
Coord C1 exon
chr9:132630264-132630403
Coord A exon
chr9:132625664-132625745
Coord C2 exon
chr9:132612087-132612255
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCCTTCCTTTTACAGCGT
3' ss Score
13.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TACAACGCTCCATCTTCACCTGCAGAATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
CGTTTCTGAGATTAAGATGGAAGATATTTTGTGTGTTCTGACAAGAGATGATTGTTTTAAAGGGAAACGATGGGGAGCCCAG
Seq C2 exon
CTCTGCAGTCCTTCATCCAAGCCTACGCCACCTACCCCAGGGAGCTGAAGCACATCTTCCACGTCCGATCCCTCCACCTTGGGCATGTGGCGAAGAGCTTCGGACTAAGAGATGCCCCCAGGAATCTTAGTGCCTTGACTAGAAAGAAGAGGAAAGCACACGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485_MULTIEX2-5/8=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(26.7=42.6)
A:
NO
C2:
PF139591=DUF4217=PD(64.6=73.7)
Main Skipping Isoform:
ENST00000372153fB13572
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATTTTGGCTCCTTCGGA
R:
TCCTGGGGGCATCTCTTAGTC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development