RnoEX0026866 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7456433-7468731:+
Coord C1 exon
chr3:7456433-7456483
Coord A exon
chr3:7462878-7462959
Coord C2 exon
chr3:7468620-7468731
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTCTTTTCTTACAGTGT
3' ss Score
11.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTCAG
Seq A exon
TGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
Seq C2 exon
AGATCCCATGCCACTGGCCCCCAGGAAATCCGAGAGCGAGCCACGGTGTTGCAGACAGTGTTTGAAGATTATGTGCACTCCAGTCAGAGGATGGTCTCCTGGGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.263
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.6=100)
A:
NO
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Skipping Isoform:
ENSRNOT00000064323fB3984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCATCTCGAGGCTTGG
R:
CTTTCTTTGCCCAGGAGACCA
Band lengths:
162-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]