BtaEX6046994 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102723810-102734688:-
Coord C1 exon
chr11:102734549-102734688
Coord A exon
chr11:102730459-102730540
Coord C2 exon
chr11:102723810-102723921
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATATGTCCTTCTTTTTACAGCGT
3' ss Score
10.65
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TACAACGCTCCGTCTTCACCTGCCGAATACATCCACCGGATTGGGAGAACGGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCGTCTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
CGTTTCTGAGGTGAAGATGGAAGACATTTTGTCTGTTCTGACAAAGGATGATTGTTTTAAAGGGAGACGAGGGGGAAGCCAG
Seq C2 exon
AAATCCCGCGCCGCTGGCCCCCAGGAAATCCGGGAACGAGCCACGGTCTTGCAGACGCTGTTTGAAGATTACGTGCACTCCAGTGAGGAGACGGTCTCCGGGGCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530-'23-24,'23-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.237
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(26.7=42.6)
A:
NO
C2:
PF139591=DUF4217=PU(35.8=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCACCGGATTGGGAGAA
R:
TCAAACAGCGTCTGCAAGACC
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]