DreEX0026227 @ danRer10
Exon Skipping
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29126464-29129611:+
Coord C1 exon
chr5:29126464-29126603
Coord A exon
chr5:29127015-29127099
Coord C2 exon
chr5:29129500-29129611
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTGGCTTCTCTATTCCTCAGTTT
3' ss Score
7.33
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TACAATCCTCCAGTTTCTGCAGCAGAATATGTTCATCGTGTGGGCCGCACAGCTCGAATCGGAGCTCAGGGTAGCAGCCTGCTCTTTCTCACCCCCTCCGAGACCGCTTTTGTGGATGTGCTGGCCAATCACAACATCAG
Seq A exon
TTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAG
Seq C2 exon
AGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507-'17-19,'17-16,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(52.6=42.6),PF047579=Pex2_Pex12=PU(2.6=8.5)
A:
PF047579=Pex2_Pex12=FE(18.2=100)
C2:
PF047579=Pex2_Pex12=FE(24.0=100),PF139591=DUF4217=PU(34.4=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCTCACCCCCTCCGAG
R:
GCTCTTCGCAGTTTGCAGAGA
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]