GgaEX1019112 @ galGal4
Exon Skipping
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6605998-6616560:-
Coord C1 exon
chr17:6616421-6616560
Coord A exon
chr17:6611621-6611702
Coord C2 exon
chr17:6605998-6606109
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTTGCTACTTCAGTGT
3' ss Score
7.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TATAACGCTCCAGCTTCACCTGCGGAATACATCCACCGGATCGGGAGGACGGCTCGGATTGGCTGTCACGGGAACAGCCTGCTTGTCCTGGCGCCTTCGGAGGCAGAATATGTCAGCTTGCTGGCTTCTCACAAGATTAA
Seq A exon
TGTCTCCGAGATAAAGATGGAGAAGGTACTATCCAGCCTGATGAAAGACGATCGCTTCAGGCTGCGCAGACCAGGAAGCAAG
Seq C2 exon
AAATCCTATGGCGTGGACCCTCAGGAAGTCCGGGAGCGGGCCACAGTCCTGCAGACACAATTTGAGAATTATGTTCACTCCAGTGAGGGGACCATCCGGTGGGCAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534_MULTIEX1-13/15=12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.105
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(26.7=42.6)
A:
NO
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGCTGTCACGGGAACAG
R:
GATGGTCCCCTCACTGGAGTG
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]