GgaEX1019113 @ galGal3
Exon Skipping
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7236763-7246449:-
Coord C1 exon
chr17:7246368-7246449
Coord A exon
chr17:7240745-7240856
Coord C2 exon
chr17:7236763-7236943
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTCCACCCTTGCAGAAA
3' ss Score
11.04
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTCTCCGAGATAAAGATGGAGAAGGTACTATCCAGCCTGATGAAAGACGATCGCTTCAGGCTGCGCAGACCAGGAAGCAAG
Seq A exon
AAATCCTATGGCGTGGACCCTCAGGAAGTCCGGGAGCGGGCCACAGTCCTGCAGACACAATTTGAGAATTATGTTCACTCCAGTGAGGGGACCATCCGGTGGGCAAAAAAAG
Seq C2 exon
CACTGCAGTCTTTTCTTTGTGCCTACACCGCCTATCCCAGAAGCCTCAAGCACATCTTCCACATCAAATCTATCCACCTGGGTCATGTGGCCAAGAGCTTTGGCCTGAGAGATGCTCCCCAGAACCTGACTACTCTTCCAACTGCTAACTCAAAGAAGAAAACCAAACCAAGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.105 C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
PF139591=DUF4217=PU(33.8=57.9)
C2:
PF139591=DUF4217=PD(64.6=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGTACTATCCAGCCTG
R:
TTGCTCTTGGTTTGGTTTTCTTCT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]