BtaEX6046995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102717802-102730540:-
Coord C1 exon
chr11:102730459-102730540
Coord A exon
chr11:102723810-102723921
Coord C2 exon
chr11:102717802-102717970
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCGTCACCTTCCCAGAAA
3' ss Score
7.41
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CGTTTCTGAGGTGAAGATGGAAGACATTTTGTCTGTTCTGACAAAGGATGATTGTTTTAAAGGGAGACGAGGGGGAAGCCAG
Seq A exon
AAATCCCGCGCCGCTGGCCCCCAGGAAATCCGGGAACGAGCCACGGTCTTGCAGACGCTGTTTGAAGATTACGTGCACTCCAGTGAGGAGACGGTCTCCGGGGCCAAGAAAG
Seq C2 exon
CCCTGCAGTCCTTCATCCGGGCCTACGCCACCTACCCCCGGGAGCTGAAGCATATCTTCCACATCCGACTGCTCCACCTCGGGCACATGGCTAAGAGCTTTGGGCTAAGAGATGCCCCTAAAAATCTTTGCGCCTCGGCCATGAAGAAGAAGAAAGCAAACCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530-'26-27,'26-24,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.237 C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
PF139591=DUF4217=PU(35.8=63.2)
C2:
PF139591=DUF4217=PD(62.7=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCTGAGGTGAAGATGGA
R:
TTTGCTTTCTTCTTCTTCATGGCC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]