HsaINT0046154 @ hg19
Intron Retention
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135493717-135501132:-
Coord C1 exon
chr9:135501051-135501132
Coord A exon
chr9:135493829-135501050
Coord C2 exon
chr9:135493717-135493828
Length
7222 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTTCCGTCGCCCTCTCAGAAA
3' ss Score
8.6
Exon sequences
Seq C1 exon
CGTTTCTGAGATTAAGATGGAAGATATTTTGTGTGTTCTGACAAGAGATGATTGTTTTAAAGGGAAACGATGGGGAGCCCAG
Seq A exon
GTGAGTTTTGTTATTTATTGTGCTCGCTGCCAACAGATGTGACTCACTTGATTTGGGGTAGTAGAGACTTTGTGTATGGGTTACTTCCTCTGTCAAGCAATACATTTATTTTAAGAACCATGAACATTAGATGAGGCCAAATCTTGATTGTTTTTTTTTTTTCCTCGTCTTTGCTTCTGGATGCGTTTGCCACTCTCATCTAGCGAGTGGGCTACGGTCCATTCTGGAAGCCTGCCAGACAGCAGCAGGCTCCCCAGAAAGGAGGTCCAGGCCAGAATGAGTCTGGAGGCAGTGCCACACGCTCAGCCCCGGTGGTCCCTGTCCAGATTCTCAGCAAGGACGGCTGCCTAGACCTGCCTATCCCAGACAGCATGGAAGAAATAAGTATCTCTGTGTCTCCTTTCAGACACAGTTAGTTCATCCATTTTTTAATGTGTGTGTGCTATCCACAGAGGAAGAGTAAAGTTGAGATCATTAAGAAGAAAAATTTTTATTATCCATGCAGTTCCATATGGAGATTCTGAGCAGGTGCAGGCAGCCCTGGACACCCTTTCCTGCTCCTTCTCTTAAGGCTGCACCCGACTAGACCATTATTCCCTCACCCCACCCCACCCCCTTACTCAGTATTCCCGTGTGTGGGTGCAGTGTTGCTGTATGTAATTTTGTCTATGAGATATTAATCACTTGAATATTTTACATTTGTTTTTGTATGCCTGAGGATGAACTGGAAAATCAGGGCCAGATAGATCAAGCTTAAGAGTTTCTTTCATGCTTTAGCATGTGCCTGTATTTGGATCATTATTCTCCCTGAGCAGGGAGGGACCCCGTTTCACTGAGCCTGACTTAAATTCTCTTGTTTTAGAGAGCATCTAAGGAAATGTATGTAATACCAGGAGAGGAGATAGCCATAGCCTCTATTAGCAAAGTGTGTGTTCCCAACCTAGGACTGTGCTACACTCTTTATGTGCACGGTCCCATTTAATCTTATAGCAATCCGAGAAGTTGGTGATGGCCCCAATTTATAGATGAGGAAACTGAGACTTAGAGAGGTAAAGGAACTTTCACAGGGGCACACTAATATGCTTTAGTCATTCTGGGATTTGAAGTCTTAACTTCAAAGCACATATATTTAACTGTATACCAATATGCCTTTATTAGTATTAACTAAACCAAGATAATTGAGTCTTTTTCTAAATAAGGAAATGTTAGTCATATTTAGAGGTGAAATTTGATCAACCACAGCAAAGATCCCTGTGAACAATAAAAGCTGTTAAAGACTCCATTGGTCATCAGGTTACTTTAAGCAAGTCAGTACTTCATATAAGACTCGTAAGCCTCTGGACCACCCTTTATTAAGTTTGTTATTAGGGGTGTTGACCTGTGACCAGACAGATCTTCATTGGTCTTGGCACACTTCCGTTCTTTTGGAACTATCATAAATTCTAGTTAAGGGGCTTTTTTGGTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCATGCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCCCTGCCTCCCAGGTTCGAGTGATTCTTCTGCCTCAGCCTCTTGAGCAGCTGGGACTACAGGCACATGCCACCACGCCCAGCTAATTTTTTCGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCCCATGATTCACCCGCCTTGGTCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTAGCCGGCCTTTTGGTTTCTTTTTTAATGTTCCCCCAGATACTTCATTATGGCTCCAGGGCAGCTCTGTGGGATCAGCAGGGAGCAGATGTGGATCTGTTGGAGGAGGCAGTGTAGCAGAGTGGCTAAGAGCATGGCCTTAGGGTCATGTTCCTCATCTGTCACCAGTGTGTGACCTTGGGCAGGGACTGGACCTCTCTAAGCCTTAGTTTCTTTTCGGAGAGGCAGTGTAGCAGAGTGGCTAAGAGCACGCCTCAGGGTCACGTTCCTCATCTGTCACCAGCCTGTGATCGGACCTTTCTTTTTTCTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTATCGCCAGGCTGGAGTACAGTGGCACGATCTTGGCTCACTACAACCTCTGCCTCCCAGGTTCAAGCAGTTCTGCCTCAGCCTCCCAAGTAGCTGGGAATACAGGCGCATGCCACCATGCCCACCTAATTTTCGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGATGGTCTCAATCTCTTGACTTTGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCTGGACTGGACCTTTCTAAGCCTCAGTTTCTTCGCACGTAAAGTTGAGATAAAATAGTGTTCTTTTAAGGACGTCAGAGGATTGTGTGGGAAATAGTCCTGGAGTCCCAAGTATAAAACATAGGACCAAAGGGCTTTTTTTTTTTTTGAGATGGAGTCTTGCTGTGTCTCCCAGGCTGGAATGCACTGGCGTGACCTCAGCTTATTGCAACCTCTGCCTCCTGGGTTCCACCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTCGATTACAGACACACACCACCATGCCCGGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTGGCCTCAAACTCCTGACCTCAGGTGATCTGCCCATCTTGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACCACACGCGGCCCAAAGGGCATTTTTTATTATTACTGTAACTATCAGGATTATTTGTAGTCATACAAGTTAGTAGCAGATGTGGAATTAAAGCCCAGACTCAGGGACATGAATCCCAGTGCCCTTTTTTGCTGTATCATAATAAGTGGAACATTAGCATCTGCCAGCTCTCTAGAAATAAAGGCAAGTAGTACAATTACACAATGAGATAGTAAGTTTGATCAAACGTCGTCTCAGGTATACTCTTTCTGGGCCTGGCATTGGTGTCAGTCTTTATCCCCGAGTGCAGATCATTTCTCTCCAGGGAGTTGATCACTGTGTGTCTGCGCAACGCAGGGAAGCTGTAGAAGGGCAGGAAGCCTCTCCTGAAGGACACGTCCCCAGAGAAGGAGCGGAGCAGCTGCATCTCCCTCCACTCTGTCAGCAACAAGCTACAGTCGTTTTTTTTTGGTAGCATCTGCCCTTCTGTGGCCTTGCAGCATAAATTCTTCTCCTTAAGACTTTCCCTGGCTTGAGGCCAGCCTCAAGGACTTCCTGAGACTTGAGGAGTGGCTCTAACTTCATGAGTAAGAGCCAGGTCCCAGATAGATATGAGTTTGAGTTTGAATCCTTGCTTCCCAGCTGTTAGCTCTGCAATCTCAGGCAGATTATCTTCTCCCCAGTCTCAGTTTTCCCATCTGTAAAACATACAATTGCTGTGAGATTTAAATAAAACGAGGTATAAAGTGCCCTGTAGAGTTCCAGACCTCATAGATTCTTAGGTCTAGAAACTCTGTCTCATGATCTCAGCCCCAGCTCCTACCTTGATAGACAGTAGTGAATGCTTGGATATTTTTAAGGTTTGGTGATTTTTTTTTTTTTTTTTTTTAAGAAAAGCTGAGTAAGTTTGGGCTTTCATGATATAACTGGTTAACTTAGAAAGCTAAATTAACCATCCTACGTTGTAGGTGTCATGTTGGTGAAGACCTGGCTTGCTGAGCCAAGTTTAACTTGAATTCAGAGGAAAAAGAAAAACTAAACTAAATTGACTGTGTTACTAATTATCACATAGATATACACAACCCGAGAGAGTATTTTATGTGTGATTCATGTCAGTAGTAAGAAGAATAAAGTAGATGCTGGATACAACTTTTAAATCTGTTATGCGTAAGAAATAACGTGTGTCTTAATTGCTGTCCTCAATTTGAGCAGTTCTCTAGCATGTGAACTAATGCCAGGCATGTAAATGTGGGTTCAGTAGCTAGGCCTTTCGTTCAGATAGCCAGACACCTCATTACAGTGCCCCTCTCCTTCACCCAGCGTGATTGAAGCCCATGGTAAATGTCCCTTTGGCACATACATTTTTGGGCTTCTGTGAACAGAAAGAAAGCGAGTGAAGCATCTGTAAAATGTATATTTCATATTTAGGTATATAAAACATATATAGCTATGTCTGGGTGTGTGAATGTTCACCTACCTACAAAGAGAATAAATTTGATCTTTCAACTTTACTGGGAAGCACTCAGAAGGTTCTAGGGACCATGGGGGTAAAACTCAGCTTGGCAATAAAGTGATTAAAACAAAACCCTTCCATTTTGCTTAAAAATACCTTGGAAGTTGGCAATATCAAGGTGCAGGCTTTCACAAAAACCTCCCACCTTTGCTATTACTTTTTATAATAAAAATAGTCCAGCCTATTTATCTTAGACTCATCTGTTGCTTCTTGATAGGTGTGAAATCTTCATCATCAAAGTATACACACACCCAACCATGTTTTTCCTACAAGCGTTTTTGTCCTGTGAAATATACCTGTAAACTTATCCCAACAAAGGAGCCGTTGCTGGCATTGCGAGATCTTAAAATAAGTTCAGAGCCCCCTGCTCATCCTTTCTGATGGCCTGTGTTTTCCAAGATCAGTAGGATGTTAGAGACAAAGGTGCATTGCGTGCGGATGGATGGTTGGAAATGTGTTTTTCTAAACTACCCATGGTCCACTAGTTGAAGTTAGCTTCATTAACCAGTACTGACTCTGTGTCTTGGAGGGTGGGAGAGCCAGCCCTGCCAGGTATCCATGTGCCCTCAGGGGTTTGACCCGCTCTCATTATAGGAGCATTTTACCTGTCGGGGGCTGAGATGGTGCTGCATAACTCTGCCCCCCTCTGTCTTCAGTTTAAATTTAGACTGTCCTCCCCAGAAGACAACTGAAAAATACCTCATTCATTCTCAAGAGGGGCAATTTTAAAATAAGGTATTTCTGGAAGCAGGGGTTAGGGAGGAGTAAGATTTTTTTTTTCCTAAGTATTGTATATATTTTTTTCTGCCATTAACTTTTTCTTATATTTTACTAAAACTGACCTTATCATTTCAAACCTGTGAACCTAGTTCTATCCTGTTTTTTTTTTCCCTACGTATTTCGCTTGTATACACACTCACATTATATATATGTAATTTTTTTTTTTTTTGGTTGGGAAGAAAAGATGCCTCATTTTGAAACCTAAAGGGGGGAATAAGAAAAGCCCTTTGTAATATATTGCCATATTATCACTAAATCCCCTGACAGTTGTGACACAGAAGCAAGTCACCTGTCACTTAAGCTTGAGGTCTCTTTAATTTTCTCCTGGAATTCGCACCAGGCTGTCTTTAATTTGAGGCCTTTATTGGAATTCTGAAACCTCTCTGCCTCCCTGGCTCTCAGATCTATTCTGAGAGCTGTTACAGAATGTATACAATAACCAACAGAGGGATTCGGAGAGGGCTGGAGCTCTGTTTATTTAACACTCTAGAGGGATTTTTGTGCTTATTCGGTCCTGGCTGCCCGGCTTTCAATATTGCTTTGACAACCATTCTGCCCTTCTCATTAATTTTAAACAGTTAAAACACAAGAAAAAGAGGAAAAAGTTTTCATTATTAAAGTGCTTTACTTTTTAATAACAGAGGATTCTGTCCGCCAGGGGAAAGGGCATCCTCGCTAATTTCACATTCATATTAAAAAAAAAAAAAAACACAGGGAAGGTGACAGTTGCGCTGCTGAGGTGGCTTAACGAAAGGAGGGCAGCAAAAAAAAGTTTGCATTTCACATCAGTTAAGAGGGTAAAAAAAAAAAAATCCTTGTTAATGACAATAGCAAATGTCCACTTTGGTAACACGGCTCCTGAGTGACTCTTCTCCTGACATTTTAGCGGATAGAACCCTTAGGGGGACCTTGTATTGAACTGTGAAATCAGCGAGACTGTCATCAACCAAACAGGTAGCAGGAATGATTTGACTAAACTAAAAACATTTTCACGTTGTTAAGTCTCTTAATATAGAGATGAACGTCGATCCAGAGAATGAGGCTTTTTCTTTCCTCCCCTTTGTTCTTCCTCTGTCAGCCTTAAAGGTGAAAGAGAGGCTCAGGGAGTCTTAGTGAGGCCAGATGCAGGCGCTCATACACCGTCCTCTACAAGGTTAAGCAGCACGACCCGGTCTCACTCTGGATTTTCCCCGGGGGTTCACACCAGGGTGGCAGGTGGAAGTAGAGGCACTAGCACCACTCAAGTGATCAGTGTCACTTGGCAGGTTGGCCTCATTGGGTGGAAGAATCTGTGTTCTCTTGATTTCACATTCAGTAGAAAGCACTCATGTTTGTTTTACGATATTGGAGACAAAAGCCACTAGTTTTTAGCGGGGATATTTAAAAAGGAAATTTTTTTCTCTGGTACTGTTAAAGGATGAAAAGAAAATAATTGTCTATTTTATTAACATTTTCCATCTGTAGGCTCTTTGCATGCACACAGATGCTACTTCTTACACAGGGACGATTTGCTGCAAAGATCCAGGCAGTCTTTGAGTGTGTTGTCCTGGAACAGCCCACTCACTCCTTAATAGGTTCCTGGCCACAGTGGCCATGGGCTGGAGGAATAAATTTGAAACACTAGAAGTCTGAACCGCTCTAGGCACTGAGGAAGCCTGCTCTGAAATTCAAGGATGGGGTAACTTTTAAAAGCAGAATGTTAGGCAGGTCACTGTGGAGTGCTCATGAAGAGAAATTGTCGGTGTTCCACTGATGCGCGTGAGGGAAAGGTGAAGATTCCTAGGAGATCCAAGACCCATTTGAAAACAGCTCATGTTCAGTGATGTTTTAAATGTCTGAATTGGACTTGGAAAATTCCAAAGTGTCTCCAATGGTCTTTGATTTTGAACATGCATGGTAAGAGGTCAGGAAGAAAAGTAAGTAAATAAGTAAACAGACCTGATGTTCTCTCTCATAAAGCCACCCTCATCCTTACTTGACTTTGACATCTCTATAGCTCCCTTTTTTCCTAGTAATATTGAAAGGATTACCCTTGTTGGCCCTAGGTGGTTACTGTGTGATTTTACTGTTATTAAATCTATTATAAACTGCTTCATTATTCCTGACCTTGACTCTATCTCTCCTTTAATCCTTCCGTCGCCCTCTCAG
Seq C2 exon
AAATCCCATGCTGTTGGCCCCCAGGAAATCCGAGAGCGAGCCACAGTCTTGCAGACGGTATTTGAAGATTACGTGCACTCCAGTGAGAGGAGGGTCTCCTGGGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-DDX31:NM_022779:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)