MmuINT0047711 @ mm9
Intron Retention
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28736663-28742522:+
Coord C1 exon
chr2:28736663-28736744
Coord A exon
chr2:28736745-28742410
Coord C2 exon
chr2:28742411-28742522
Length
5666 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTTCCATCACCCGCCCAGAAA
3' ss Score
4
Exon sequences
Seq C1 exon
TGTTGGTGAGATTAAGATGGAAGATATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
Seq A exon
GTGAGTGCTTCATATCTTGATGGAGACTTTATGTGTGCACTGTGTCTTCTGCCAAACAGAATGTACATTCCAAGGACCATGAACATCAGATGAAGTTAGACCTTGATTGTGGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTCCCTTCTCTTCCCTCTGGATGTTTGCTAGTCTCATCCTGTTAATGGGCACCAGTCCATTCTGGAGGCCTGCCAGGCAGCAGCAGGCTCTGCAGAAAGGAGGTCTAGGGCATTGAGTCTGGAGCCAGCAGTGTAAGTTCACCCAGGTGGTGGCCCCTCTCCAGATCATCAGCAAGGACCACTGGCTAGACCTGTTCATCCGTATAGCACGGGGGAAGAAATAAATATCGCTGTCTGTCTCTCAGACATACTTAGGTTCCCCATTTTTAATGTGACTGCACTGTCTACAGAGGAAGAATAAAGTTGAGATCATTAAGAAGAAAAATGTTTACTATCCATGCAGCTCCATATGGAGATACCGAGCTGTGCCCGCAGGCCTGAGCAGCAGCCCCTCCCTGCTGCCTCTAGCTCGGCCCTGCCCCTCTAGTCCATTGCTTAGTATGCTATGTGCACATGTGTGTTGCTCTATATGATTTGACTAATTATGTGAATATTTTACATTTATTTTCTTAGGCCTGATGATAGAGTGGGAAAATCAGACCCACTTAGATCAGGCTGTGATATTTCCATCATGTCTCAGGTGCCTTTATTTGAATCGATACTTCGTTTGAGGCAGGGGCTAGATTTATCTGGCCCTGGCTTCAGCTCTTTTCCAGAGCACACTTGAGGGAGTTTTCATCAGCAAGCTATATTCAGTGACTTTCTGTGTGAAACATCTTGCCACACTAGAGTGAGCCTCTCAGTCCCTTTCTAAGAGGCTGAGCGGCTGGCACAGATGCACTGTCTTTGCACACGTCAGTTATTCTGTAACTCTTGTGTTTAGAGTGTTTATGTTTTAATGTTGCTCTGGCTACTTCACCGTGGTTCCAGTCCAGCTCCACAGTGTCAGCAGGGAGCTTGGGAGTTACAGAGGAGTGATCCCTGGCTCACACTCCTCAGCTGGGTGCCTCTGGGAAACTCTGGGCCTTTGCAAGCCTAGGCTTCTTCATGTGTAAAATTGAGATATACAGTAGTCACTCAAAGGAGAGAATGAGGTAGTGTAAGAAACAACCCTAAAACACCCAGTATACTACTGCAGGGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGAGTAAACACCCAGTGTACTACTGCAGGCACAGAAGGCTAGCACTGTAGTTGCACACTGTGCCACCGGTGCTGTATCCTAATAAATAAATGGATCATGAGTATCCGCCTGCCGTCCAGAAATGAGAACCAGCTGGAAAATGACAAGATGAAATTCTAAAGGTTGGATCAAACTTAGCCTTCTGTAGCTTGTTTCTGAGACCAGCTTTGGTTTGAGTAGTCTTTATCCCTGAATTCAGACTTTTCCCCAGGGCTGTGATTGTTGTGTAAGTCTGAACAGCACCCGTGTCCCCAGGGAAGGAGCAGAGCAGCTGCATTTCCCTCTGTCCTTTCAGCAACTGGCCATGTCATTCTTAACATCTGCCCTTCTGTGGCCTTCTCCTTAAGCCTCTTCCTGGCTGGGGGCCAGCCTCAAAGACGTCCTGAGCCCTGAGAGCCATTGTAAGAGACTCTCTGGGCAAGAGTCGTAAGAGTCGAGTGAGCCAGGACTTGAGTCCTTGCCTTACAGCTGGTACCTCTGTGGCCTTGGGCAGGAACTCAGTCTTCCTTTCTGCAGAAAGATTATGAGAGTGCCCATATTTGAGGGTTGCCTGGGGGTTGAATGAAATGAGGCAGAAAGAGCCTGGCATGCTTTCAAACAGTGAGCGTTCTCCAGAGCAGAGACCATATCATCGCCTCACCCTAGGCTCCCACCTTTTGGCAGGAATAAATTGAATGCTTTTATAATTTTATAATTTGCTGCTGTTTATTTGAGGGAGAAATGCTAAGATTGGGTTTTCACTGTTATTGTTAGATGTGACTAACTGAGAAAACTAAATTCACCGCACTAGACTTCTGTTGATTGAGACCTGGTTTGTAGAACCAAGCCTCGTTTTAACTCAGAAGAAGGACTCTCTGATCTCAGTTGCTATGTTGTTAATCACAGAGCTATCTGGCCTAGGAGGGTGCAGGGAGTGAGGGGTCCAGCTTCCATTCTGTTCCTCATGAAAAGTGTACCTGTCCTGGCTACTCACTGCCTGCAGTGCAGACAGCTCTGCAGCAGATGCACAAGTGGCCAGCATACAAACACTGCACCTCGTTACCATCCCTTCTACTTCACCAGCTCCACTCGAGCCCATGGTAAATGTCCCTTTGGCACACACAGTTTTGGGCTTCTGTGAACAGAGAGAGAGCTAGTGAAGCATCTGTAAAATGTATATTTCATATTTAGGTGTATGAAATATATATACAGCTGCGTCTGGGTGTGAGTGTTCACCTCCCTACAAAGAGAATAAATTTGATCTTTCAGCTTGACTGGGAGGCTCTCAGAAGGTTCTGGGGACCATGGGGTGAAGCTTAGCTAGGCAAGAAAGTGATTAAAATAAAACCCTTCCATTTAGTTAAATAGCTTGGAAGATGGCTGTTCAGCACAATACCTCGACTGCACACACCGCTGTGTGCCACCGCCACCGTCTAAACCTTGTCCTAGGTGGAGGGGTCCAGCCTGGTCTCACTGCAGTGTCTCAGTCTCTGGTGTTGTGAAGTTCCCGCAGAGTGTGCACCCTCCCAGCATGGTCTTCTACAAGTTTTTTTTTGTCCTGTGAGCTCTGCTTATAAAATTCTCCAAACTGTCCCTGGCATTGGGAAGTGTTAAAATCCCATCAGAGCCCCTACCTCATCATTTCCCATGATCTTTTGTCTGGAGGATCAGTGGGGTGTTGCGGACAAAGGCACACCAAGAGCCAGTAGGGGCTGGAGGCATGTTTTTCTCAACTGCCTGTGGTCTGCTAGCTGTAGGTTGGCTTCATTAGCCAGTAGCCAGCCTGTGTCTGTGAGGGTGGGAGAGGCAGTGCTGCCTGCTCACAAGCCTGGGGGCTCTGACCCGCTCTCATTACAGGAGCGTTTACCTGTCTAAGGCTGAGGTGGCACTGCCGAACTCTGCCCCATTCTGTCTTCAGTTTAAATTTAGACTGTCCTCCCCACAACCAAAAATTACCTCGTTCAGTCTCAGGAGGGGCAGTCTTAGCAGTGTTTCTGCAAGTGGTGGTAGGAGATGCTTTTTCCTAAATGCATTGTTTTCTGTCATTAACTTTTTCTTACGTTTCTCTAAAACTGACCTCATCATTTTAACTGTGTGAGCCTGATTTTATCATTTTCTACACATTTCACTTGTATATACACTCACATTATATATATGTAATTTTTTTTGGTTGGGAAGAAAAGATGCCTCATTTTGAAACCTAAAGGGGGGAATAAGAAAAGCCCTTTGTAATATATTGCCATATTATCACTAAATCCCCTGACAGTTGTGACACAGAAGCAAGTCACCTGTCACTTAAGCTTGAGGTCTCTTTAATTTTCTCCTGGAATTCGCACCAGGCTGTCTTTAATTTGAGGCCTTTATTGGAATTCTGAAACCTCTCTGCCTCCCTGGCTCTCAGATCTATTCTGAGAGCTGTTACAGAATGTATACAATAACCAACAGAGGGATCCAGAGAGGGCTGCAGCTCTGTTTATTTAACACTCTAGAGGGATTTTTGTGCTTATTCGGTCCTGGCTGCCCGGCTTTCAATATCGCTTTGACAACCATTCTGCCCTTCTCATTAATTTTAAACAGTTAAAACACAGGAAAAAGAGGAAAAAGTTTTCATTATTAAAGTGCTTTACTTTTTAATAACAGAGGATTCTGTCCGCCAGGGGAAAGGGCATCCTCACTAATTTCACATTCATATTAAAAAAAAATACAGGCAAGGTGACAGTTGTGCTGCTGAGGTGGCTTAACGAAAGGAGGGCAGTGGAGACGTTTGCATTTCACATCAGTTAAGGGGTGAAAAAAATCCTTGCTAATGACAATAGCAAATGTCCACTTTGGTAACACAGCTCCTCAGTGGCGCTTTTCCTGACATTGTAGTGGATAAAACCCTTAGGGGACCGTGTACTGTGAAATCAGCCAGACTGTCATCAGCCAAATAGGCAGCAGGACGATGTGACTACACCAAAAACATCTTCAGGTTGTTAAGTCTCTATTAATGCAGAGAGGAGTATCTACCCAAAACAGAGACTTGCTCTCCTCTCCCTTTGGTTCCTCCTCTTCTGGCCTTCAAAGTAAAGGTCAGACACAGGTCTGACACCTGTCCTCTGAGGGTGTAGGTTCCACGCATGGGAGTTGAGTCTGGGGCTCAGTAGCCCCTTCACATGAGTAGTGGCCCCCCTCCTTAGGCTGCAGAGCCTCCTGGTCAGAAAGAGCACCTGTGTTTGTTGTGAGATAGAGGAAATAAAAAATCAGTACTTTCTAGAAGAAGTTGTTAAAAGACATTTTTCTCCTCTGGAACTTGTAAAAGATGAAAATGGTCCTATATATTAATAGTTTTCAGAGGCTACAGCAGCGCTTCTGGCTGCAGAGACTCAGGCAGCCTTTGAATATGGCTTACTGAAAAGCTAGCTTCTTAATAGGTCCTCAGAACTCAGCTTGGCCATTAAAGGTTTTTGGAGCAAAAATCTTAACCACTCACAACCAACCTCTGGGAAGGGAGGAAGCAAGCTCAAAAATTCAGGGATATATAGCTTTGGTGTTTGGTTTTTTGTTTTGGTTGTTTTGTTTTGGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGAAACTCAGAAATCCGCCTGCCTCTGCCTGCCTCCTAAGAGCTGGGATCAAAGGCGTGCACCACCACGCCCGGCTGATATGTAGCTTTGTAAGACTGAATTTTAGGCAGATCCCTGAAATGGTCTTAGGGAAAAAAATGCTTTTTCCACTGATAAAGGGGCGTGGGGGAGGTAGATAAGGGAGAAAAGTCTTAGGAGAGAAGAGTTCTTTAAAAACAGCCCGTGGTTCATCATTTAAAATGCCAGAATCAGACTTGGAAAACTCCAGAGTGCCACCAAAGGTCTTTTACTTTGAGCAGGAGTGGTAAGAGGTCATGAAGGAAAGTAGGCAAACAAACAAACAGACCTGGTCTGCCCCCTTTTTACGCAGTTCTCATCTTTGCTTGACTTTAACATCTTTATAGCTCCCTTCTTTCCCTAGTAATATTGAAAGGATTACCCTCGTTGGCCCCTGGGTGGTTGCCGTGTGATTTTACTGTTATTAAATCTATTATAAACTGCTTCATTATTCCTGACTTCAACTCTGTCTCTCCTTTAATCCTTCCATCACCCGCCCAG
Seq C2 exon
AAATCCCGTGCCAGTGGCCCCCAGGAAATCCGAGAACGAGCCACAGTATTGCAGACAGTGTTTGAAGATTATGTGCACTCCAGTCAGAGGATGGTCTCCTGGGCTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806-Ddx31:NM_001033294:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: