DreINT0055708 @ danRer10
Intron Retention
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29127015-29129611:+
Coord C1 exon
chr5:29127015-29127099
Coord A exon
chr5:29127100-29129499
Coord C2 exon
chr5:29129500-29129611
Length
2400 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTTTGCCTTGATGTGTGCAGAGA
3' ss Score
5.88
Exon sequences
Seq C1 exon
TTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAG
Seq A exon
GTAAATTTTGACATCTTAAGTCCAAAGAGTGCTTTGGTTTTTACCCTTGGGCATCAATTTAAAAAGGTTCTAAAAAGGTTATTGAATGTTTTATACTTTCTATATTAGGGCCGTCAATCAGATAAAATATTTCATCTCAATTAATGGCATGATTGCTATGAGTTAACTTGTGATAAATTGCACATTTTTCTAGGTATATCTTAAATTATTGTAAAGATGAATTTTGAAACCGCATAACAATAACATCAGGGAATTAAGTGTCTCTATAAAACATTGTTTTATACAGATGCACCGAAATGAAAACGAAGCATGATGAAGGACTTGGCAGAAAAATTATTTTCTGTTTTTTCCCTCCAATACATTTAGCAAAGTTTTTACCATGGCATAAATAAAAACGTCAAAAAGGGTTTTTGGTCAAGATTTTTTCTTGGTGTTTAAAGAAAAATAATCAATTACAAAAGTACAATAAATACATAAATGAAAAAGGGAAAAAAAAAGAATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACACAACATTTTTAATGTTCCAGCAGACAGTAGATTAGCAATATAGAATATAGGCTAATAATACAGAATATAGGCTAACTTTCAGGAAGTGTTTAAAAAAATATATATATTTTGTGAGCATATCTAAATGAATGTTTAGAAAAATGCTCTTTGTAGCTCATGGGCCTTTAATGGCTTTTCTGAGTTAAAAGTGTTGAGACATTATTTAAATGTGGTTTATCTACTTGCATGCAGACGAAATAATGATGAAGTAATTACAAGAAATGAGATGCATTTAAATATGAGAAACTGTTTCTTTCATCAATATTCTTAGGGTGCTTTCACACTAGCACTTTTGGTCTGCACCCAGGTTCGTTTGGTTTTAGAGTACAGTACAATTAGCCAGTGTAACCTCTGTCTTCTGAACTCTGGTGCGCACTTGTGAACCATACCCGGGTCCACCTGAAAGAGGTTGTCTGGGGTACGGTTCACGTGAACTCTGGTCTGGTTCACTTGTGGTATGAACACAATCCTACCAAATGACGGAAGTGAACTGCTAACAGTACAACAAACTATCATTTTTAGATTGTTCATCCCTGTCTACATGTCTGTGTATCACGTTTTGTACCTTGGTGACAAGCAGGACTGAGCAGACCAAGCGGGCCAGGGCAAACATAGTGATAATGTCCTTTTGTCTCTCCCAGAGTCGCCTCCTGTATGTCCAAAACCAAAAGATTCATTAAAAAAAGAACGACGGTGATGTGCATATGTCATTCCATTTTGGCGCTTTGCTTTTGTAGCCATCAGAAGGAAAAAAGACAGTGTAAACACAAGTCAACTAAGAAGGTGGCAAGGGGGAACAATCGAACCAAGTGTGAAAGCACCCTTAATGTTCAAAATGCGATCATGTCATTTGACATTAAATTTGATCAAAACTACATTTAAAATGGTCTGAAATCAAAAGCCGAGACTTTATTTTAAAAGGAAAAATAACCTTGGATGTCAGATTCCCTATAAATAATACTTTTTTGAATTTTTCTTTGTCCCTCCTCAAAGTAACAGCAATAAAAGAACTTGCAATAAAACGTCCTCCCACATGCACCTTCAGTAGTTTGTTGTTGCTATTCTGTCTGTTTTTTATTTTTTATTTGAATCAACAGCCCAGTTCAGTTTTAAGCCCTTTTAGACAAACTGGTTAGTGCAAAAGCAATGATAAGCTTGTTGGAGCCATGCATACATGATTTGTAGTAGAAGAAATTGCTCTGCTCACTTATAATGCATGCCTCATGTGCTGATGACAAATTTATGTCACATGAATCCGAATGTATACTCAAAATGAAAGTAATTTGGGCTTAAACCTTAAGAACAGCGGTTCTGATCCAAAGAGTCAATGTTGACATGTTTGACTGCACCACTGTTATAACTTTTCAATCTTAGTTGAAGCTCACATGTGGTTGAAAAAGCAAGTCTAGAGAACAGCTGTGAGAGAAGAATGGCTTTCTCTTTATCTCTTTTTTTTTCTCCCCTCCCTCTGAACAATGAGAGCCATCTGACAACAATGAGCGAATGTTTCTGCCAGCGCTCAGTCAGTCCTAATCCTGATTTAATGTCCTTTTCCCTCATCACCACCAATGGGCTGCTTGTAATCCTCTGTCTTGCCTCCCCCCTTGTTAGCAGCCTCATTTGAGGGTCAGAGGTCATTGACAGGGAGGGTTGATGTCATTAGTGTGTTGAACCATTAACACTTTTATGATGCTCCTGTTTTTTTTTTTTACATCATTTAATATAATGCGCTTTTTCAATATCGTTTCTGGATTGTAAAATGTTGATTTCTGCTGTTTGCCTTGATGTGTGCAG
Seq C2 exon
AGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507:ENSDART00000148314:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF047579=Pex2_Pex12=FE(18.2=100)
A:
NA
C2:
PF047579=Pex2_Pex12=FE(24.0=100),PF139591=DUF4217=PU(34.4=57.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]