BtaINT0047617 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102723810-102730540:-
Coord C1 exon
chr11:102730459-102730540
Coord A exon
chr11:102723922-102730458
Coord C2 exon
chr11:102723810-102723921
Length
6537 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTTCCGTCACCTTCCCAGAAA
3' ss Score
7.41
Exon sequences
Seq C1 exon
CGTTTCTGAGGTGAAGATGGAAGACATTTTGTCTGTTCTGACAAAGGATGATTGTTTTAAAGGGAGACGAGGGGGAAGCCAG
Seq A exon
GTGAGTTTCATTGTTGACTGTGCTTGCTGCTCACAGACGTGACTCATCTGGTGTGGGGAGGCAGCGACTCTGAGTACTGGGCACTCCCTACCACTGGCGAGTAAAGTGTGTGTTTTCGGGACCATGAACATTAGACGAGGCCACATCTTGCTGGCGTTTCTCTCTCTTTGCTTCTGGATGCATTTGCTGGCCCATCCAGTTAATGGGCCCCCGTCCGCCCTGGGTGTCTGCCAGGCGGCAGCAGTCTCCCCAGAAGGAGGGCTCGTCCCCGGCCAGAAAGGTTCTGGAGGCAGCAGCGCTCCATGCTCAGCCCTGGTGGTCCCCCTCCAGCTTACCCACATGGACACCTGGCCTGCCCCATCCACCCAGGACCGCGTGGAAAAGCAAATGTCTCAGAACCTCCTTTCAGACACACTTAGTTCATCCATTTTCTAACGTGTACTATACGCAGAGGAAGAGTAAAGTTGAGGTCATTAGCAAGAAGAATTTTTATCATCTGAGCACTTCCATATGGAGATCCTGAGCAGCACAGGCCTCCCCGGACAGCCTTTCCTGCTTCCTTCTGAGGCCTCCCCCTGCTCGGAAGCACTTCCACTCCCCTCTACCACGTTACTAGATCTACCACCTAGACTTGTGTGTGTGTATCTGTGTGTGTGTAGTGTTGCTCTGTATAATTTTGTCCATGAAATTTTAATATTTGGATATTTTTGCATCTCTACCCCGATGCCTGTGGATAGACTGGAAAATCGGAGCCAAATAGGTGAAGTTTAAGAGTCTCTTTTGTGCGTTAGTACGTGTATTTATTTGGATCAGTATTCTCTCCGAGGCAAGGAGTCTGTTTGCCTGACCCCGATTTAAGTTGTCCTGTTCCAGAGAGAACCTGCAGAAGTGCACTAAGGAGAGGAGAGGAGCAGATGTCTGTTGCCCAGCGTGTGTTCTGGGCCTGGCTCTGTGCTGATGAGCTCTTCCCACACTTGGTCCCGTCTTAGCCTCTCAGCAGCCCACAAGGCGGGTGTTACTCTCCCACTTCATAGATGAGAAAACTGAGGCTTAGAGAGCTGAAGGAATATCCGTGAGGGTGCACTGATAATTGTGGGTCCTTCTGGTGTGAAAGCAGGCCACCTGTCCTTCACGGGATACCAGCAAGCCTCCATTCAGTATTAATTAGGCAAGTAAATGAAACTAAAATGCTTTCTAGATTGGGTAACGTTAGCTGTTTTCATGGCTTCCCTGGTGGTTCATTGGGTAAAGAATCCACCTGCGAATGCAGGAGACGCAGATTCAATCCCTGGGTTGGGAAGCGCCCCTGAGAAGGCAGTGGCAACCCATTCCAGTATTCTTGCCTGGAGAATTCCATAGACAGAGGAGCCTGGTAGGCTACTGTCCATGGGGTCACAAAGAGTTGGACATGACTGAGCAACTAAGCAGCTGTGTTCATAGAGGTGAAATTTGGGCAGTAAATGGTACCACAGCAACAATCCCCATGAACAAGAAAAGCTATTAAGGACTTGGTTGATCAACCTGTTATATTAAGTGATATTTCACTACAGAGGGTCTGGCCCCCCCAGGCCTTCAGGCCATCCCATAATAATAGACTGTTGTCGTGGGAACTGGCTGGAAACTATAGAGACTCATGGGTCTTGGCACACTTCTCTGTTCTTCAGAAACTACTGCAAATTCTAGTTAGGGGGCAGGGTTTATTTTCTGTTTTTCCAGATGTTTCCACAGCTGTGTAATTACAGCCCCAGGACAGCTCTGTGGGCTGAGCAGGGGCACCCGGGGAGCTGTCTGAGGATGGGATAGCCCAGTGGTCAGGAGCACGGCCTTTGGGCCTGAATCCTCATCTCACCAGCTGTGTGGCTTCGGGCCAGGACTAGACCTTAGGGTCAGTTTCTTCCTGTGTACAACTGAGATAATTTTAGTTTTCTTCTCAGAAGGAGAGTGAAGAATTGAGCGAAAAATAACCCAAGAGTTCCAACACAGGGACTGAAGTGTATTTATTATTATTATTATATCACATCAGTTAGCAGCACAAGCATATATGGAATTGAAGCTCAGACTCATTGACACGAAGCCCAGTGCCTTTTTTTTGCAGTTTCACACTAAGTGGAAAATTAGCACTTGGCTTCCCTGGTGGCTCTGACGGTAAAGAATCTGCCTGCAATGTGGGAGACCTGGGTTCTGTCCCTGTTTGGGGACGACCCCCTGGAGAAGGGAATGGCCACCCATTCCAGTATTCTTACCTGGAGAATTCCATGAACAGAGAAACCTGGCAGGCTACAGTCCATGGGGTCATAAAGAGTCAGACACGACTGAGCGACTTTCACTTTGACCGTTCTCCGGAATGAAGAGCAAGCAGCAAAATTAGTGAAGGAGATAGTGAAGGAGATAGTGAAGGTTTCAATAACCTTGTCTTCACTTACACTGTTGCCAGGACTGGCTCTGGTTTCAGTATTTATCCCCTAAGCACAGCCCAGTTCTGTCCCGGGTGCTGATGGTCGTGTGTCTCCGAGTATCTCTGGGGAGGCTGTGGACGGGCACAGGGCGCCTCCTGTAGGACTCTTCCCCAGAGCAAGAGAACCTTCCTCTGCTCTCTCGGAAACAAGCCATTCTGTAAACATCCGCCCTGTGGCTGGCGGCCCTAGTTCCTCTCCCTAAGCCTTTTCTGTGGCTCGAGACCAGCCTGGAAGGCTAGCTGGGGCTTGAGGAGCCCTCCTGAGATGGTGGGTGGGAGGCGGGGCCCAGAGTCCCACAGGCTCGGACCCGAGTCCTGGCTTCACAGTCAGTCATTCTGCAACCTGGGGCAGATCCTCCCCAGCCTGGGTTTCCCCCCTGGAGAAGGAGGACGTCTCTAGTACTTGTCCTGCCAGGCCGCTGTGAGGTTTAAATAACACACGGAGCACTGTGGGTCATGTGAGCTCACCTCCGCCCTGAACTGCTGCCTTGATGGACATGATGTTTCGATATTTTTACGGTCTGGTGATCTTTGAAAGAGAAAAAGTGCTAAGTAAGGCCAGGCTTCTACCACGCCAAAATAACTAACTGGTTAACTTAGAAAACTCAACTAGTCATGCCAGGTTCTAGATGTCACATCCATCAGCACCACCTGTTTGCCCAAATTTACTTTTCATTCACAGGACAAAGCAAAACAAAAACTCAGTTGACTGCATTACTGATTATTATGTAGGTTACTGCCTTCAAGAGTGTATTATGTGCGTGAATCCTATGAATGGTAAAGAGAATAAAGTGAATGCTGGACACAACTTTTGATTCTGTTTTGCCTGAAAGATGCAGTGCCCTAATTGGCATCTTTGATGTGGGCAGTTCTTGCTGGCGTACCAGCCAGTGCCTGGCACACAAAGGTGGGTGCGGTGGCTGGGCCTTCATGCTGAGCCAGGTGCCTCATCATGAAGCCCATCCTCACCCAGCTTGGTTGAAGGCCATTGTAAATGTCCCTCTGGCACATACATTTTAGGGCTTCCGTGAACAGAAAGCAAGCGAGTGAAGCATCTGTAAAATGTATATTTCATATTTAGGTATATAAAATATATATAGCTGCGTCTGGGCGTGCGAATGTTCACCCACCTACAAAGAGAATAAATTTGATCTTTCAACTTGACTGGGAAGTGCTCAGAAGGTTCTAGGGACTGTGGAGGTAAAATTCAGCTTGGCAGTACAGTGATTAAAACAAAATCCTTCCATTTAGTTTAAAAATACCTTAGAAGTTGGCAATGTCAAAACACATGCTTCAGATAAAAAAAAGTCTCCCACCCCAACTGCTCCCACCTAAAACTTTTTACAACAAAAATAACCCCGCCCAGCTGTCTTGTACTCATCTGTTGACTCTTGATAGGCATGAATTTCCATCTCTACATTATAAACACACACCCAAACATATTCTTCCTAAAAGTTTTTTTTGTCCAATGAGATACACCTATAAGCTCATCCTAACAGAAAGCTCCTTGGCATCATGAAAGATTAAAATAAGATCACTAGCCATCGTCTAGTTTTTGTGGATTGTCTGTTCTTCCCAAGACCAGAAAGTCTCTACAGACACAGAGCACTGAGTGTGTCTAGACCTTTGGAAATGTTTTTTTCCTAAACCACCCACCGTCTGCTAGTTGCGAGCTGCTTCATTAAGCAGGACTAAGTCTGTGTCTTTGAGGGTTGGGGGGGCCGGTCCTCGGAGATGTGCCCTCTGGGGTCTCACCCCCTCATTATGGGAGCTTCTTCCCTGTCTGGGGCTGAGCCGGTGCTGCCTGACTCTGCCCCTTCTGTCTTCAGTTTAAATTTAGACTGTCCTCCCCAGAAGACAACGGAAAAATACCTCGTTCATTCTCAAGAGGGGCAATTTTAAAATAAAGTATTTCTGGAAGTGGCAAGGGGCGGGGGGGACTAAGACCTGCTTTCTCTTCAGTGTATGATGTTTCCTGCCATTAACTTTTTCTTATATTCTACTAAAACTGACCTCATCATTTCAAATGTGCGAACCTAGTTTTATCGCCTTTTTTCTACATATTTTACTGGTATACACACATTATATATATGTGTATATGTAATTTTTTTTTTTTGGTTGGGAAGAAAAGATGCCTCATTTTGAAACCTAAAGGGGGGAATAAGAAAAGCCCTTTGTAATATATTGCCATATTATCACTAAATCCCCTGACAGTTGTGACACAGAAGCAAGTCACCTGTCACTTAAGCTTGAGGTCTCTTTAATTTTCTCCTGGAATTCGCACCAGGCTGTCTTTAATTTGAGGCCTTTATTGGAATTCTGAAACCTCTCTGCCTCCCTGGCTCTCAGATCTATTCTGAGAGCTGTTACAGAATGTATACAATAACCAACAGAGGGATTGGAGAGGGCTGGAGCTCTGTTTATTTAACACTCTGGAGGGATTTTTGTGCTTATTCGGTCCTGGCTGCCCGGCTTTCAATATCGCTTTGACAACCATTCTGCCCTTCTCATTAATTTTAAACAGTTAAAACACAGGAAAAAGAGGAAAAAGTTTTCATTATTAAAGTGCTTTACTTTTTAATAACAGAGGATTCTGTCCGCCAGGGGAAAGGGCATCCTTGCTAATTTCCCATTCATATTAAAAAAAAAGCGCAAGGAAGGTGACAGTCTCGTTGCTGAGGTGGCTTAACGAAAGGAGGACAGCAAGAAAGAAGTTTGCGTTTCACATCAGTTAAGAGGGTAAAAAAATCCTTGTTAATGATAACAGCAAATGTCCACTTTCGTAACACAGCTCCTGAATGACTTTTCTCTTGACATTTGAGTGGATAAAACCCTTAGGGGGACCATGTACCGTGAAATCAGCTAGACTGTCATCAACCAAACAGATAGCAGGAATGATTTGACTAAACTAAAAACATTTTCAGGTTGTTAAGTCTCTATTAATACAGAGACAAACTCTGCCCCCAAGAAGGAGGCTTTTTCTCCCCCCGCCCCACCCTTTAGTCTTCCTCCAGCAGCTTTAACCGTGAAAGATGCCAGGGTGCCTGCGAGAGGCGCGGTCAGCAGACCCCGGAGCACGCCCCCTGTCCTCTATGGGAGTTAAAAGGAACATGAACTGGGCCTCATGCAGGTTTTCTCCTGGTGACCTACATCGGGTGTGGCGGGTGAGGAGGGCTGGAGCTTCATTAGCACCATCCAAAGGATCAACACCTCTGGGAAGGCGGATTAGCCAAGTTTGGGTTCTGTTGATTCTCAGTTTCATATTCAGGAGACAGCGTTCGTGTCAAGATATGACACATAAGCCACGTGTTTTCGGGGGGATGTAAAGAAAGGAAATCTTTTCTCTGGGGTTGCTAAAGGCTGAAAAGAAATGAAGTTTTGGTTTTATTCACATTTTCCACCTGTAGGGTCTTTTGTGCATACAAATATGACTTCTTACAGAGGGACGGTTGGCTGCAGAGATCCATGGCGGTGGCCTCGCATGGTTGGCTGGAGCAGCCCAGTCCTCCGTGGGTTCCTGGGCACAGGGCTCTGGGCTGCAAGAATGTTTCTGGAACACTGAGAGTCTGGACCTCTCAGAAGTGAGGACATGTGCTCTGTGATTCAGGGACAGACCATGTTGTGGGCAGGTGGCTGTGGGTTGCTCTTGGATAGGAATGTCCAGGGCTCCACCGATGAATACCAGGCAGGGAGCAGATTGAAAGCCTAAGTGGGACATACAAGGTTCCTCTGAAAACCGCTTCTGTCCCATCATGTTTTAAAGGCCTGAATTGGACTTCGAAAATTCCAAAGTGTCTCCCATAGACTTTCACTTTGAACACGCGTGATAAGAGGCCAGGAAGAAAAGTAAACAAGTAAATAAATAAGAGACCCGACCTGCTCCCTCACAAAGCCATCCTCATCTTTGCTTGACTTTAACATCTTTATCACTCCCTTTTCTTCCCTAGTAATATTGAAAGGATTACCCTTGGTGGCCCCTTGGTGGTTACTGTGTGATTTTACTGTTATTAAATCTATTATAAACCGCTTCATTATTCCTGACTCTGACTGTCTGTCCTCTAATCCTTCCGTCACCTTCCCAG
Seq C2 exon
AAATCCCGCGCCGCTGGCCCCCAGGAAATCCGGGAACGAGCCACGGTCTTGCAGACGCTGTTTGAAGATTACGTGCACTCCAGTGAGGAGACGGTCTCCGGGGCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530:ENSBTAT00000042916:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139591=DUF4217=PU(35.8=63.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development