RnoINT0046000 @ rn6
Intron Retention
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7462878-7468731:+
Coord C1 exon
chr3:7462878-7462959
Coord A exon
chr3:7462960-7468619
Coord C2 exon
chr3:7468620-7468731
Length
5660 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTTCCACCACCCTCCCAGAGA
3' ss Score
5.45
Exon sequences
Seq C1 exon
TGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
Seq A exon
GTGAGTGGTTCATATCTTGATGGAGACTTTATGTGTGGGCTGTGTCTTCTGCCAGACAGAGTGTACATTTTAAGGACCATGAGCACTAGATGAAGTCAGACCTTGATGGTGATGTTTTGGATTTTTTTCCTTCTCTTCCCTCTGGATATGTTAGCTAGTCTCACTCCGTTAATGGGCACCAGTCCATTCTGGAGGACTGCCAGGCAGCAGCAGGCTCTGCAGAAAGGTGGTCTAGGGCATTGAGTCTGGAGCCAGCATTGTGAATTCACCCAGGTGGCAGCCCCTCCAGATCATCAGCAAGGACCACTGGCTAGACCCGTTCATAGCACGATGGAAGAAATAAATATCGCTGTCTCTCTCTCAGACATACTTAGGTTCCCCATTTTTAATGGAATGCACTGTCTACAGAGGAAGAGTAAAGTTGAGATCATTAAGAAGAAAAATGTTTACCATCCGTGCAGTTCCATATGGAGATACCGAGCTGTGCCCACAGGCCTGAGCATCCCCTCCCTGCTGCCTCTCGGCCCTGCCCCCTAGTCCATTGCTTATTATAGTGTGTGCATACGTGTGTTGCTCTAGTCCATTGCTAGTATAGTGTGTGCACATGTGTGTTGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTATGTGGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTATGTGGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTATGTGGCTCTAGTTCATTGCTAGTATAGTGTGTGCACACGTATGTGGCTCTAGTCCATTGCTAGTATAGTGTGTACACACGTGTGTTGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTGTGTTGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTGTGTTGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTGTGTTGCTCTAGTCCATTGCTAGTATAGTGTGTGCACACGTATGTGGCTCTAGTCCATCGTTAGTATAGTGTGTGCACACGTGTGTTGCTCTGTGACTGGGCTAATTGCATGCATGTTTATGTTTGTTTTCTTAGGCCTGATGACAGAGTGGGAAGATCAGACCCACTTAGATCCGGCTGTGCTAGTTCCATTTTGTGTCAGGTGCAGCATTTGAGTCGATGCTGCTTTTGAGGCAGGGGTTAGATTTATCTGGTCTTAGCTTAAGCTCTCTTCTTCCAGAGCACAACTAAGGGAGTTTATGTCAGCAAGTTATTTTGAATGACTTTCTGTATGAAACAGCGGCCAGACCAGAGTGAGCGTATCAGTCTGTTGTTAAGGGATCGAGCAGCTGACACAGACGCAGTGTCTTTGCGCAGTCATTCTGTAACTGTTGTGTTTAGAGTGCTTATTTTAATGTTCAACTGGCTACTTCACTGTGGTTCCAGTCCAGCTCCACAGTGTCAGCAGGGAGCTTGGGAGCTACAGAGGATGCAGTGTTGAGAGTGCGTGAGAGCAGATTCCTGGGTCAGACTCCTCAGCTGGTTGCCTCTGGGAAACTGGCAGAGCTCTGGGCCTATGCAAGTCTCAGTGTCTTCACGTGTAAAAATTGAGATATACAGTACTCACTCGAGGAGAGTATAGAGTAGTGTAAGAAACAGTTCTAAAGTGCCCAGTATCCTACTGCAAGCTACAGAAGGCTACACTGTAGTTGGACACTGGGCCGGCAGTGCTGTATCCTAATAAACAGATCACGAGCCTGTGCCTGCCCTGCAGAAAGGAGAACCAGCTGGAAATGACGAGTGAAATCGTAGAGGTTGGGTCAAACTTAGCCTTCTGTAGCTTGTTTCTGAGACCAGCTTTGGTTTGAGTAGTCTTTATCCCTGAACACAGACTTTTTTCCTCTAGGGAGGTGATTGTTGTGTAAGTCTGAGCAGCACCCCCACCTCACAGGAGTACATGTCCCCAGGGAAGGAACAGAGCAGCTGCATTTCCCTCTGTCCTTTCAGCAACTGGCCATGTCATTTTTAACATCTGCCCTTCTGTGGCCTTCTCCTTAAGCCTTTTCCTGGCTAGGGGCCAGCCTCAAAGACGTCCTGAGCCTTAAGAGCCATTGTAAAGGTCTGAGCAAGAGTTGCAAGAGTCGAGTCAGCCAGGACTTGAGTCCGTGCCTCACAGCTGGTGCCTCTGTGGCCTTGGGCAGGAACTCAGTTTTCCTTTCTGCAGAAGGATTATGAGAGTGCCCATATTTGAGGGCTGCCTGGGGGTTGAGTGAAATGAGGCAGAAACAGCTTGGCGGAGACCATCTCATCACTTCACCCCAGGCTCCCACCTTTTGGTGGGAATGAATTGAATGTTTTTATAGTTTTATAATTTGCTGCTGTTTATTTGAGGGGGAAATGCTAAGTAAGATTGGGCTTTTACTAACATTGCTAGATATGATTAACTTGGAAAACTAAATTCATGGCACTAAACTTCCTGTTGGTTGAGACCTAGTTTGTAGGACCCAGCCGTATTTTAATTCAAAGGAAGGACCGCCTGGTCTAAGTTGCTGTGTTGTTAATCACACAGATATCTGGCCTGGGAGGGTGGAGGGAGGGAGGGGCCCAGCTTCTTTTCGTTCTGTTTCTGGTGAAAAGTGTACCTGTCCTGGCTACCCACTCCCTGCAGTGCAGACAGTTCTGCAGCAGATGCACAAGTGGCCAGCATACAAATGCTGTACCTCGTTACCGTCCCCTCTACTTCACCAGCTCCACTCGAGCCCATGGTAAATGTCCCTTTGGCACACACAGTTTTGGGCTTCTGTGAACAGAAAGAAAGCTAGTGAAGCATCTGTAAAATGTATATTTCATATTTAGGTATATGAAATATATATACGGCTGCGTCTGGGTGTGAGTGTTCACCTCCCTACAAAGAGAATAAATTTGATCTTTCAGCTTGACTGGGAGGCACTCAGAAGGTTCTGGGGACCACGGGGTGAAGCTTAGCTAGGCAGGAGTGATTAAAACAAAACCCTTCCATTTAGTTAAATATATTTTGGAAGCTGGCTGTTCAGCACAATGCCTCAATGTGCACACCCCTTCGTGCCACTGCCACAACCTAAAACTTTTCATAGGTTCAAGGGGCCCGGCCTAGTTTTCACTGGGGCACCTCAGTTTCTGGGTGTTGTGAAGTTTTCATGCACTGCATGCACCCTCCCAGCATGTTTTTCTACAAGTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTGTCTTGTGAGCTCTGCTCATAAAATTCTCCAGACTGTCGCTAGCATTGGGAAGTGTTAAAATCAGATCAGAGCCCCAGCTCATCCTTTCTTGTGGTCTTTCTTCTGAAGGATCAGTGGGGTGCTGCAGAGAGAGGCACGCCCGAGAGCCGGCCGGCAGGGTCTGGAGGCAGGGTCTGGAGGCAGGGTTTCTCAACTGCCTGTGCTCTGCTGGCTGCAGGTTGACTTCATTAACCGGTAGCCTGTGTCTGTGAGGGTGGGAGAGGCGGTGCTGCCTGCTCACAAGCCTCAGGCTCTGACCCCCTCTCATTAAAGGAGCATTTACCTGTCTCGGGCTGAGGTGGCACTGCCGAACTCTGCCCCGTTCTGTCTTCAGTTTAAATTTAGACTGTCCTCCCCACAACTAAAGTCACCTCGTTCAGTCTCAGGAGGGGCAGTCTTAACGCTGTTTCTGGAAGTGTGGTAAGGGTGCTTTTTCCTACATGCATTGTTTTCTGTCATTAACTTTTTCCTACGTATCTCTAAACTGACCTCATCATTTTAACTGTAAGCCTGATTTTATCATTTTCTACACATTTCACTTGTACACACACTCACATTATATATATGTAATTTTTTTTTTGGTTGGGAAGAAAAGATGCCTCATTTTGAAACCTAAAGGGGGGACTAAGAAAAGCCCTTTGTAATATATTGCCATATTATCACTAAATCCCCTGACAGTTGTGACACAGAAGCAAGTCACCTGTCACTTAAGCTTGAGGTCTCTTTAATTTTCTCCTGGAATTCGCACCAGGCTGTCTTTAATTTGAGGCCTTTATTGGAATTCTGAAACCTCTCTGCCTCCCTGGCTCTCAGATCTATTCTGAGAGCTGTTACAGAATGTATACAATAACCAACAGAGGGATCCAGAGAGGGCTGCAGCTCTGTTTATTTAACACTCTAGAGGGATTTTTGTGCTTATTCGGTCCTGGCTGCCCGGCTTTCAATATCGCTTTGACAACCATTCTGCCCTTCTCATTAATTTTAAACAGTTAAAACACAGGAAAAAGAGGAAAAAGTTTTCATTATTAAAGTGCTTTACTTTTTAATAACAGAGGATTCTGTCCGCCAGGGGAAAGGGCATCCTCACTAATTTCACATTCATATTAAAAAAAAATGCAGGCAAGGTGACAGTTGTGCTGCTGAGGTGGCTTAACGAAAGGAGGGCAGCGGAGAAGTTTGCATTTCACATCAGTTAAGGGGTGAAAAAAATCCTTGCTAATGACAATAGCAAATGTCCACTTTGGTAACACAGCTCCTCAGTGGCGCTGCTCCTGACATCGTAGTGGATAAAACCCTTAGGGGGACCGTGTACTGTGAAATCAGCCAGACTGTCATCAGCCAAATAGGCAGCAGGACGATGTGACTACACCAAAAACATCTTCAGGTTGTTAAGTCTCTATTAATGCAGAGATGAGTGTCTACCCCAGAAGGGAGGCTCTCACTCCTCTCCTTTGTTCCTCCTCTTCTGGCCTTAAGAGTGAAGGGAAGACAAGGGTCACACACAGGTCTGACGCCTGTCCTCTGAGGGCCAAGGCTCCACCCGTGAGGGTGGGGTCCGGGGCTCAGTAGCCCCTTCCCATGAGCAGCAGCCCGTCTACTTAGGCTGCAGAGCCTTCTAGTCAGTAAAAACACCTGTGTTTCATATTGTGCGATATAGGAAATAAAAAGTACTTCCTAGAAGGAATTTTTAAAAGACATTTTTTTCCTCTGGAACTTTTAAAAGATGAAAATGGTCCTATATATTATTAATGGTGTTCAGAGGCTGCAGGAGTAGCTGGCTGCAGAGATTCGGGCAGCCTCCGAATGTGACTTACTGGAAAGCTGCCTTCTTCATAGATCCTCAGAACTCAGCTGGATTGTTACCGGCTTCTGGAGCCGATCTAAACCACTCACCATTCGCAAGCTCAAAATTCAGGGATATATAGCTTTATAAGGCTGAATTTTAGGCAGATCACTGGAATGGTCTTATGGGGGGGTGGGGATGCTTTTTCCACTGATAAGGGGGAAGGGAGGAAGGGAGAAAAATCTTAAGAGAGAAGAGTTCTTTGAAAACAACCTGTCGTTCATCATTTGAAATGCCAGAATCAGACTTGGAAAACTCCAGAGTGCCACCAAAGGTCTTCCACTTTGAGCAATAAGAGGGCGTGAAGGAAAGTGGGCAAACAAATAAACAGACCTGGTCTGCCCCCTTTTTACTCAGCTCTCATCTTTGCTTGACTTTAACATCTTTATAGCTCCCTTCTTTCCCTAGTAATATTGAAAGGATTACTCTCGTTGGCCCCTGGGTGGTTACCGTGTGATTTTACTGTTATTAAATCTATTATAAACTGCTTCATTATTCCTGACTTCAACTCTGTCTCTCCTTTAATCCTTCCACCACCCTCCCAG
Seq C2 exon
AGATCCCATGCCACTGGCCCCCAGGAAATCCGAGAGCGAGCCACGGTGTTGCAGACAGTGTTTGAAGATTATGTGCACTCCAGTCAGAGGATGGTCTCCTGGGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040:ENSRNOT00000064323:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]