BtaINT0048014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94526960-94530253:-
Coord C1 exon
chr11:94529998-94530253
Coord A exon
chr11:94528757-94529997
Coord C2 exon
chr11:94526960-94528756
Length
1241 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCCCTCGCTCTCTCCGGCAGAGG
3' ss Score
9.19
Exon sequences
Seq C1 exon
GCCACAGCCATATCGGACACTCAAGGAGTCAGACAGTGCAGGGGACGAGGCCGAAAGCCCGGAGCAGCGAGCGCGGGAGCCTGTGGGCCCCACCCCAGCTCCACACGACCGGGCCGCCAGCATCAACCTCCTGGAGGATGTCTTCAGCAACCTCGACATGGAAGTCCCGCTGCAGCAGCTGGGCCAGGCCAAAAGCTTGGAAGACCTTCGGACCCCCAAAGACCTGAGGGAGCAGCCGGGGACCTTTGACTATCAG
Seq A exon
GTATGGTGGTTGGAGGTGGGCACGGGCTGGGGGCACTTTCTGCACGTGAGGCAGGTTTTCCCACATGACAGTGAGACACCAAGGGAGAAAGAGCCACTTTTCCAAGTCCCTCAGCCAGTGCTCAGAGTCACTCTGACTGCAAACTCTGCCGGGCGGGCCAGTGACCAGAGCCCCGCACACAGTGATCGCTGGAGAACAGCTACAGCCTGATGAAAATCTGCCCGCTGCTTCATGGGCGGCGCCATGACCCCTGATGGAGCTGGGATTGTCCCCACCTCACCAGGCTCCTTGAAGAGCCTGTGGATCAGAGCTCTGGGGCTCTGGATACTCACCTGTGACCCCTGATCTTCCTTGAGACTTTCAGTCTGTCACCACCTGTGCCTGTCTCTTCACTTGTGCCAGGCGGCTGCTGACTCTGCAGTCCCTGGGTCACAGTGTGGAATTCACAAAGCTCCCACGTATCCAGGGGGCGCTAGTGGTAAAGAACACACCTGCCAGTGCAGGAGATGTTAAGAGACAAGGGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAGAGGAGCCTGGGGGGCTACAGTCCATGGGGTTTCAAAGAGTTGGACACGACTGAAGCAACTTAGCACACATATCCGATGATTCACACAAGCCCATCTGTAGGGAATTGCTATTTCCAGGCTGCAAATGAGGGAGCTCAGGCCAAGAGAAGGGACATGACACCCAGGTCGTGGCCCAGCAGGTGGCAGAGCTGGACAGAGCCCAGTCCTATTTCAGCCCCAGCCAGTGTGCCCTCACCCAGCCCCCGAGCCTCACTTGCCCTCTTGGGCTCAGGGGTGGCTGAAAGTGCCCACACGCTTTGAAAAGTAAAATGGGTCAGGCCAGTAGAGGGTCAGCAGATGGAGTCCTTTTCCTAAAACTAATTAGCAGCGCTGGCTTGAAAAGACAGGGCTTTTTCTGGAGACCCTTTGTGCCACCCTAGTGAGAGAAGCCTGGCCTGGAGTCCAGACAGACCTGGGCTTGCTTTCTACTGCTGATCTGGGCCGAGCCCCCAACTTCCCTGAGCCCCAGAGACCTAGCTGGCCACAGTCCCAGGACCACAGCCCCAGTGTCCCCCTGGCGCACAGGAGGGGGTGGGGAGAGCCCATCTGTCCCCGGTCAGCTGCAGTCATTGCCTCCCTCGCTCTCTCCGGCAG
Seq C2 exon
AGGCTGGACCTGGGCAGAAGTGACAGGAGCCGTGGGACACCAGGGGCCTTGAAGCTCGCCCACCCGCACAGCAGGCTCTGGAGCCTAGGCCAGGATGACATGGCCATCCCCAGCAAGCCGCCCGCCGCCTGCCCCGAGAAGCCCTCAGCCCTGCTCGGGAACTCCCTGGCCTCACCCTGCAGGCCCCAGAACCAGAATGGCCTCCTGAACCCCAGCGACAAGGAGGAGGTGCCCACACCCACCCTGGGCAGCATCACTATCCCCCGGCCCCAGGGCAGGAAGACCCCAGAGCTGGGCATCGTGCCCCCGCCTCCTACTGCCCGCCCAGCCAAGCTCCAGGCCCCCGGCATCGCCCTTGGCGACTTCTTGGAACAACTGCCGGCTGAGCGGGAAAGGCGGGCTGCCCTCAGCTCAACCCCATTCCCTGGGCTCCTCTCCAGTGCTGCACCCCAAGACCCCACTGAACTGCTCCAGCCACTCAGCCTGGCCCCAGGGGCTGCCGGCAGCAGCAGTGATGCCCTGCTGGCCCTGCTGGATCCACTTAACACAACCTGGTCGGGCAGCTCCCTTCCACCAGGCCCTACAGCCCCAAATGTAGCCACCCCATTTACTCCCCAATTTAGTTTTCCCCCCATGGGGACCCCCACCCCATTTCCACAGCCATCACTCAACCCCTTTGTCCCACCTCTGCCAGCGACACTGCCCACCATGCCCCTGGTCTCTGCACCAGCTGGGCCTTTTGGGGCCCCTCCTGCTTCCCTGGGGCCAGCCTTTGCCCCCAGCCTCCTGCTGTCCAATTCTGGCTTCTGTGCCCCACATCGATCTCAGCCCAACCTGTCTGCCCTCTCCATGCCCAACCTCTTTGGCCAAGTGCCCATGGGTACCCACTCCCTGCAGCCTCTGGGTCCCCCAGCAGTCGCCCCCTCAAGGATCCGAACATTGCCCCTGGCCCGCTCAAGTGCCAGGGCCGCCGAGGCCAAGCAAGGGCTGGCCCTGAGGCCTGGAGAACCCCCACTCCTCCCAGCCAGGCCCCCCCAGGGCCTGGAGCCAGCACTGCAGCCCTCTGCTCCACGAGAGGCCAGAGACCCCTTTGAGGATTTGTTACGGAAAACCAAGCAAGATGTGAGCTCGGCCCCAGCCCCCGGCTCCGTGGAGCAGCTCAGGAAGCAATGGGAGACCTTCGAGTGAGCAGCGCTGAGGGTGGGGCGAGCCAAGGCCGGCCGGCCCTGCTTCCCCTGCTGCTGTTTCTACCCAGGTTCTACTGGTGGGAAGGGATGGGAACCCTCTCTGCCGCCCCTCCTCCTTTCCACACTGCCCATCTCTGGAGAATGGCGCCAGTTCCAGCCTGGGAATCGACCCAGCTCCTGGGTGCCTGTCCTGTCCCGACCCTTCCCCTGCCCCCCTAGTTGGGTTTTGCACTAAAGAGGTCAGCTGGGCCAGCGATTGCCCCAGGCCACATCTTACCCACCTTCCCTCTGGAAACTGCCCACCAGGAGCCCCGCGCGTCCTCAGGATGTCTCCTCCTGAGCCCCGTTCTCTTGCCCCAGCTGCAGCCCAGCCCGCACACCCCACCTTGATGGGCACGAGTGTTGGCGGTACACCAGCTCGTCTGCACGAGAGGCACGTGGTTTGGAGTTTGAAGTAAGGAACCCCCCTCCCCCACCCCTCCCCAGCTGGAGGATCTACCTGGCGAGGCATTTCCAAACCCTGTCTAGCAATATGCACACTCTTTCTTTACTGAGTCTTCACCCCAACCCCTCCACCTCCGTTTTTCTGACTTGGTTGGGATCTGGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610:ENSBTAT00000061512:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCATATCGGACACTC
R:
ATGTCATCCTGGCCTAGGCTC
Band lengths:
356-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development