RnoINT0046417 @ rn6
Intron Retention
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22061126-22063846:-
Coord C1 exon
chr3:22063588-22063846
Coord A exon
chr3:22063395-22063587
Coord C2 exon
chr3:22061126-22063394
Length
193 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TCCTCCCTCCTTTCCCACAGAGG
3' ss Score
11.26
Exon sequences
Seq C1 exon
GCCACAGCCATACAGGACTTTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCCAACTCGGGAGCCCTGGGGGCCTACCCCTGCTCCACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGATGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTTCGGGTCCCCAGAGACTTGCGGGAACAGTCAGGCAGCTTTGATTACCAG
Seq A exon
GTGTGGTGGGAGTGGGGACAGTAGCTGATGGGGCTTGGAGTCCAGATGGGCTTGGGTCTCTGCAGGTGTCCCAGGTACCTGCAGTTCCTCCTAATCTCAGGAGCCATGTGCTCGGTAAACAGGAAGGGTGGGGTACCTTCTACCCTTGCCTGGGCCAACCAGTGGTCATCACCTCCTCCCTCCTTTCCCACAG
Seq C2 exon
AGGCTGGACCTATGCAGAAGTGAGAGGGGCCTTAGCATGGCTGCAGCCTTGAAGTTTGCTCATCCATATACTCAGCTCTGGAGTCTCGGACAAGACGACATGGCCATCCCCAGCAAGCCCTCCATGACCTCCCCTGAGAAGCCCTCAGCTCTGCTTGGTACTTTGCCAGCACTGCCTGTCAGACCCCAGAACCAGGAGGGCATCCTGAGCCCCAGCATCAAGGAGGAGACTCCCGTGCCAGCTCCAGGCAGCATCACCATTCCCAGGCCACAAGGCAGAAAGACCCCTGAGCTTGGCATTGTGCCTCCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGGTGCTGGCGGCCCACTTGGTGACTTCTCTTCAGAGCCACTACAGATGGACCTGGAAAGACAAGCTGCTCTGAGTCCAGCCCTCTTGTCAGGGCTGCTCCCGAGAGCTGGTCCCCAAGGCTCCACAGAACTTGTGCAGTCACCCAGCCCAGCCCCAGGAGCTGCAGGCACAGGCAGCGATGCCCTGCTTGCTCTCCTGGACCCACTTAACACAGCCTGGTCAGGCAGCACCATCCCATCCTATCCTACTACCCCCAGTGTAGCCACCCCATTCACCCCCCAGCTCAGCTTCCCCTCAACAGTGACACCCTCCCCTTTTGCACAGACACCACTCAATCCCTTTGTCCCCTCTGTGCCAGTAGTACCACCCACCATGTCCCTGGGCTCTACACCAGCCAGACCTTTTGGGACGCCTCCAGCATCCCTAGGGCCAGCATATGCACCTAGCATCCTATTGTCTGGTTCTAGCTTCTGTGCCCCTCACAGGTCTCAGCCCACCCTCTCTGCTCTCTCTATGCCCAACCTCTTTGGCCAGATCCCAATGGGTGCCCACACTAGTCCCCTGCAGCCACTTGGCCCCCCAGCCGTTGCCCCCTCCAGGATCCGAACATTGCCTCTGCCCCGCTCAAGTGCCAGGGCTGCTGAGGCCAAGCAGGGGTTGGCCCTGAGGCCAGGTGAATCCCCACTGCTGCCTCCTAGACCACCACAGAATCTACAGCCAACCCTGCAGCCCTCTGCTCCTACACAGGCCAGAGACCCCTTTGAGGATTTGCTACGGAAAACCAAGCAAGATGTGAGCCCAAGCCCAGTCCCGGCCCCGGCCCCAGCCCCAGCCCCAGCCTCAGCCTCCACCTCTGTGGAGCAGCTCCGCAGGCAGTGGGAGACCTTCGAGTGACCATGCCTATGCCACTGTCCAGTACCGTGCCTCCCCAGTGTCCCGTTCCTGGCCAGGCTTCACCGGGGCAAAGGGACTCTGCCCCTCTCCTCCATAGCCCATCTCTGAGGCCTGGCCCTGGGAGCTCGTCCCAGAGGAGAGAGCTGCCTGCCACCACCCTCAGCACCCTGTGTGGGTTTTGCACTATATGTCAGCTGGGCCAGCTGTGTCCCACCACCTTCCCTCCCTTAGTCCAAGAGGAGTCAAGAAGCTCGAGGCTGCTCTCAAGCCCAGCTCTCCTCCTTTGCTGGGCCCTACCCCACAGGGCAGATGTCAGTAACGCACTGTGTAAGCACATCTTTGGGGGACATAGGTGTTTGGGGGGCTGGAATGAGGACCACTCCTGGGCTGGCATTTCTCCCTGGTGGTCATCTCCAAACCTCACTAAGCAATACACTCTTTGCTGAGTCTTCACCTAACCACCAAACTCGAGTTGTTCCTAAAGGGCCAGCGGTCTGGAGACCTAATGGTCAACAAGCCCAGCCCCAGCCAGCCCTTCCAGGGCTCGGGAACACCAGCAACTCTAATTTATACGACGACCCCCAAACCTGAGTCGAAGGAGCTGCCTTTAGCTCTGCCACCTCCATACCTCTGGGCTTTCCTGTCAATCAAAGCTCAGGCTCAGCCTCCTGCCCATGGAGCTTATGGGCACCAGTGATGGAGTCCAGCTCAAAGGACAAGCTTCCTGACACAGGCAAAAGAGAGGGCAGCTGCTTGAGCTCCTGGGTCAAGATCAGGTGGGGCCCCAGGCCCCCAGGGGCCCCGTGGAGTGAATATACACATGGCCTCTGAGCCTGGGGCGGGTGGGGCCCAGCCCTCCCCACTGTCTCCAGCCTCTCGCCAGCGCAGAAATTCCTGAGTCCAAGTCACCAAAGTTATAATGAAATGTTTGTTATTGTTTCTTTGATCTTGCTTTTCCTTTTTACCTTATTGATTTGATGAATCTTGAAAATTGATTCCTTTCAATAAACCAAGGTAAAACACAGACTAACCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526:ENSRNOT00000025443:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.813
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGACAGCGCAGAAGGTG
R:
CACTTCTGCATAGGTCCAGCC
Band lengths:
255-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]