GgaINT0124173 @ galGal3
Intron Retention
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9736949-9738318:-
Coord C1 exon
chr17:9738063-9738318
Coord A exon
chr17:9737411-9738062
Coord C2 exon
chr17:9736949-9737410
Length
652 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
CAAACACTGTTTTCTTGCAGAGA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCCGCAGCCATACCGGGCTCTGAAAGAATCTGATAGTGCTGATGGAGAAGAGGCTGTCAGTCCAGAAAAGGCAAAAGAGCCTCTGCCTCCAAGCCCTCTTCTCTTGAGCAACGCCACAGAAATCAACCTCCTTGAAGACATTTTCCCTAACTTAGAAGTAGAAACACAGCCTCAGCCTCTCAGCCAGGCTAAAAGCCTGGAAGACCTGCGGACTCCAAAAGAAGAGACAGATCAGCGATGCACGTTTGATTACCAG
Seq A exon
GTTTGGACAGAATTCCATATGCCCTGGGGAAATTTGCAAAGAACTAGGGTTGTCTGTTATGCCTTGAATAATATTTACTTAGTATTGAGTAGGTGCATCCATTTGTCCATATGTTTCAAAGTTCATTTCTGAATTAAGAAATTATTGAACTGAGACTCAGTTGTAAGACAGTGGCTTTTTTCATTAAAACATCAGTTGGACAATCTAGATTGCTGAAGAAGAATACTCTTTGAAGAACTTCACTGAATATATACAGCTGAGAAAGTGACAAACTCTGACAGGAAAGAAAAGGATGTCATTTCTACCTTAAAATGGTATTTTAGTGTTACGTCCAGATATTCCATTCGACAGCTTTTGCTGTACAACAATTCAAGTTTTTTCACTTTTGTACCCTAGATATAGATGCTCCTTACTTGGCTAACAACAGATGCCACAATATATCACAGCTGAACACCTTATTAGAGGCAGAACTGTAATTAAAACTGCAGACTTCTGCTTTCCTGCCTGTCCTTCTAGGCTATATGCAAATGTCCCTCTCTTTTCAGTGTTCACACTGTGGACAGATCTTTGTCCACTTGTAGCTGAGCAGTCTGTCTTCAGGCTGATCCATGCTAAGAGGAGATCAGTGAAAGCAAACACTGTTTTCTTGCAG
Seq C2 exon
AGAATGGATCTTGCTGGGTCTGAGAGGAACAGGATTGTGCCACCAATGAAGCTGTCTCACCCTTACAACAAGCTGTGGAATATGGGTCATGATGATATGGCTATTCCTACCAAGTACTCACAAAGCTCTCCAGAAAGGCCTCTGACTGCACTTGGTAATGTACCGCCAATCACAAGGAGACCCCGGAGCAGAGACAGCATTCTGGCTCCTGCAGAAAAGGATGACTCAAATCCTACTGCTCAAGGAAACATCACCATTCCTAGGCCACAGGGAAGAAAGACTCCTGAACTGGGGATAGTGCCACCACCGCCAGCACCCAGGGCTTCCAAGCATCAGACACCAACTGGGCCAACAGAAATTCTCAGCACTCACACTACAGGATGTAGCCAGTTGGTTTCAGATCTTATCCCAGAGCCCTTAGGAGTTGCTAGGTTGTCCTTAGAACCTGAAGGCCAGCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157:ENSGALT00000001740:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGCCACAGAAATCAACC
R:
CAGAATGCTGTCTCTGCTCCG
Band lengths:
353-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]