BtaINT0048024 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012433 | DENND1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N0M9]
Coordinates
chr16:78439112-78439975:-
Coord C1 exon
chr16:78439935-78439975
Coord A exon
chr16:78439181-78439934
Coord C2 exon
chr16:78439112-78439180
Length
754 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTCTGTTTTTCCTTTGCAGAAA
3' ss Score
13.39
Exon sequences
Seq C1 exon
GGAACTCGAAGTCATACCAGCAATGGGTGCATACAGTCAAG
Seq A exon
GTAATAATAAACCTTCACAGTTTCTTTTTTTTTTCCTCTTTAATGATAAGTAAAAATGTTCAGTTCAGGTCTGCTGTTTATATATGCTGTTTATGGGCAATATTTTAAAGGTTTCTATATTTTCTCACACTTTAAACATTTTTATGCTTATAGTTTGTTGGTATTTATAAAGAAAATTTTTAAATGGAAAGCTTTTGTCTTTCTATTTTTCAAGATAAATGGCTTGATTTGAAAATCGTGATTTTGCTGTCACCTTATAATATATCCCAAAAGATGAAGTTAGATGGAGTGGTAGGGCTTGATGGGAATTTTATCATTTCTGGTAATGTGCTTTTGTTAACGTGGTGTTTTTAAAACATAACTCTCTTGCGCAGATTGAGACTTTATTGCCGAACACTAAAACATTTCAGAAACAGTTGATTGTATTTATTTTTTATTAAGCTTTATACACACACACACACACACACACACACACATATATATATATACTGGTCACATTGCCTACGTCTGCCTAAACCACAAAGATGAAAGGATTGTGTTCCATCAATTAAAAGAATAGAGGAGAATTTTTACGTTTTGTATGGAGTTACTATAGCATGTATAAAAGCTTGAAAACATTTAACATGACATAATTATGTAGGTCTTTCTTTAAGCTGTGAGAAAAGCTGTTAATTCTATATTACCAATAATGCTTTGTTTTCAGGACAGTCGGGCCCCAGATTTTTAGGAACATGTTTCTGTTTTTCCTTTGCAG
Seq C2 exon
AAAGGAGGTGCACTGTTCAACACAGCAATGACCAAAGCAAGCCCTGCTGTACGAACAGCATATAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012433:ENSBTAT00000016502:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development