GgaINT0039600 @ galGal3
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2459110-2459922:+
Coord C1 exon
chr8:2459110-2459150
Coord A exon
chr8:2459151-2459853
Coord C2 exon
chr8:2459854-2459922
Length
703 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
GCATGTTTTGTTCATTGCAGAAA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GAAATTCAAGGTCTTACCAGCAATGGATGTACACCGTGAAG
Seq A exon
GTATAGAATATTCCGTTGGTTAAGTAACTGATTTTTGGCAAAAAAAAGAGTCCGTATCCTTGACAGCTTTCTTTCTTTAAAACTTTGCCCACTTCCTTATATGTATGTAATAGAAAAAGTTTTTTTTATTTGGAAAGAAAACATAAATATAACATGTTTACTGTGGGGGTGAGAGGAGGAGACTCAGTACAATTGGATATGAAGCTTATCACTTCTAGTAAAGAGCATATAGTGCATATAGTTAATATGGGTTTGTGCAGTTTGACTCACAGAAGATGCTTGGTATAACCTTGTTCTTTTGTAGGATTAGTAAAATATATTATTTTAGATTAATTGAATTCTTAGGTGATTAAACATGATAGTTATTTATTTCAAGTTGAAGTATTTTGAAGTTACATAATTTAGGGTAGGAACGCAAGATAAATAACCATAACTTCTGAATTGATTTTGGTATGGAAGCAGTGAATAAAGAATGACAATACATCATCCTGTTAGAATGCATTGATAAAAGCGTCAGCTCTGATAGTGACATACTGTAACCCTTGTGTGTCTGCAGACAGTAGGCTGTGGAAGAAACACAGCTGTGGCTGTTCTAGCCTCTTTATGCTGCTAATTCTTTTCAGCACACTCAGATTTTCCTGTTGTCTTAACTTTTGACTTAGGTTATAAATGTTATTAACATAGCATGTTTTGTTCATTGCAG
Seq C2 exon
AAAGGCGGTGCACTGATCAACACAGCAATGACCAAAGCCACGCCGGCTGTGAAAACAGCATACAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]