DreINT0056018 @ danRer10
Intron Retention
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23423691-23424609:+
Coord C1 exon
chr22:23423691-23423731
Coord A exon
chr22:23423732-23424570
Coord C2 exon
chr22:23424571-23424609
Length
839 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTCTGATCTCTTTTGCATAGCGG
3' ss Score
5.92
Exon sequences
Seq C1 exon
GTAATTCGAAGTCTTATCAACAGTGGATTCACACCAAGATG
Seq A exon
GTAAGCAGCAGGAAATGACTCATTTTTTCCCACTCATAATGTTAATGTTAATTTGGGCTGAATAATCAAGCCCAAAGCAGCGGAGCGTTTTTATTATTATTTCCTGTTGGTTGTGAGGTGATGAAACCCATCCAGTGGAGCGAATGGCATGAAAGCGGAGATGCGATGCCAGGGAAGATGGTGAAAACTGTGGCGTGGGACAGTTAAGATGTCGAGACGGGCTTGATATGATGTGACAGCCAGTCATACGAGATGACACGAGACTTCTGGCAGGAAACACAGCCATTACTCGATAGATTGAACAAAAGAAAAGCCCTCTTTTCTTCTCTCCTTCCCTCCGCTGTCTTCCTCTCACCTCTGTTTTCTTTTTCCACTGTCTCTTTGCGTTCTCAATCCGTCAGCCGGAGCCGAATTAGTTCTCTGGAGTGCCGCTTTCAAAAGGTTTTGTGTAAAGTTCACATCCTCTGACTGACACAAATCCATAAGTAAAAGGGCTGCAGTGCCGTCATGTCGGTCAAGGCTTTGGGAAGTAAATTCACCAGCATCTTTGGTGCGTTTTAGCGTGTTAGCCTTGCAGCAATCATCAAGTAAAAAGCCACGATAGATGAAATCAGACAAGAGCACGCCATTCGCTAAGAGCTTCGTCACACATAGCTTCGTATAAAGGGACCAGGCTTGTTTAACAGGCAAAGGTGTTTCTCATCGCTTTAGGGCAAAACAAACGCTTTGACTGAAGGAACAAGGCATTTATTCAGCTGTTAATGATTTGTGACAGTAAATGTGTGTTTATTTTATGTGAAATGTGTTGGACAAAAAACATTCTGATCTCTTTTGCATAG
Seq C2 exon
CGGGAGAGGGCGAAACCAGTCGTGAAGAACTTTCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868:ENSDART00000160457:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0301110=PFEMP=FE(14.4=100)
A:
NA
C2:
PF0301110=PFEMP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]