HsaINT0046694 @ hg19
Intron Retention
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197515052-197515903:-
Coord C1 exon
chr1:197515863-197515903
Coord A exon
chr1:197515121-197515862
Coord C2 exon
chr1:197515052-197515120
Length
742 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TTTCTGTTTTTCTTTTGCAGAAA
3' ss Score
13.32
Exon sequences
Seq C1 exon
GGAACCCGAGGTCATATCAACAATGGGTGCATACAGTCAAG
Seq A exon
GTAATCATAAGCTTTCAAATGTTATTCTTTCACTCTAATATAAATGGAGAAATGTTCAGCAAAAGTATGCTGTTTATACTTATGCTGTTTATTTGAAATATTTGAAATGTTTGTATATTTTGTCACATTTTAAATATTCTTATTTTACGTTTATAGTTTGTTGATACTCATTAAGATAATTTTTAAATGGAAAGTTTTGGTCCAAAGATAAATGGCTCATTTTGAAAAGCAAGATTTTACTGCCAAATGTTGTTTTTCTTATATTATTTTCCAGAAGAAGAAATTAGGTGGGGTAGAAGGATTTGATGGCAATTTTATAATTTGTGGTAATATAGTTTTGTTAATATGATTTTTAAATATGAAACTTTCTCCCCCAGACTGAGACTTTATTTGCCCGATATTAAAACAGCTGATAAACTTGTATTTCTTTCTTATTAAGCTTTAAATATATTCAAATTACTAGTCATATTGCTCAAGTCTACCTAAGCTTCAAGGAAGAAATGATTTTTAAGTGATGTATTATATCAACTAAAGAACAAGGTGGAAAGTGTACATTTTGTTTGAAATTATTAAAGTACATAGAAACTTGAAAACACTGAACACTGAACATGAAATAATTTGTATAGGTCTTTAAGTTGTGAGTAAAGCCCTTTTTTTAAATATGCAACTTACTGTAATACTTTGTTTTCAGGATATTTTAGCTAAAAGTTTTTGGAAATATGTTTCTGTTTTTCTTTTGCAG
Seq C2 exon
AAAGGAGGTGCACTGTTCAACACAGCAATGACCAAAGCAACCCCTGCTGTACGGACAGCATATAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-DENND1B:NM_001195215:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(28.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(6.7=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)