BtaINT0048025 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012433 | DENND1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N0M9]
Coordinates
chr16:78437449-78439180:-
Coord C1 exon
chr16:78439112-78439180
Coord A exon
chr16:78437506-78439111
Coord C2 exon
chr16:78437449-78437505
Length
1606 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CCAGTGTTGTCATTTTCCAGGCC
3' ss Score
8.85
Exon sequences
Seq C1 exon
AAAGGAGGTGCACTGTTCAACACAGCAATGACCAAAGCAAGCCCTGCTGTACGAACAGCATATAAATTT
Seq A exon
GTAAGTTCTCTTTTGATGTTTAAGAATTCTGTTGATAAAATTTTATAACATTTTCTTAGATGATACGCACTTAAATCTAGAATATTTTCTGGTTTCCTTTAAATAAATTTAGAGTTAGTATTGACCAAAGCAAACTCAATTATTAAAATTGTATCATTGTCTAGGCAGGGCGTTTGTTTCAGATAAGTTAAAAATGCTTTTTATTTAAAAGCTATCCGCAAAATTGTGCCCTCAGATTGAAACAGTCCACAATGAAGTGACAGTTTAAAAGATTTGATTCTTTTATATAACAACGTACTTTAAATTCTCATTGTGTACTTGAGGCTTAACTAGAAACAATTTTTTAAAAATATGACAAGTCCTCTTGCCTCAAAGGTCCCTTGACTTTCCAAAGTTAAAACTCCCTATTGATACCCCATGGCTTATAGTAAAATAATAACACCACCAGGAGCTACCATAGCAAGTAAATAATGAATAAAATGGAAGTCTCTCTGCTCTGATTGCTGAGACCTTTCAGACCTGGCCCCTCCTATCCTGTTATTTCCCTGAAGCCCCCAGCCCTGGTGTCTCCAGGTCTGAGATCCTTCTCGTTCCATGGGTGCAGGACGTTCTCTGCTGTGTCTTCATCCTTCACAACCCTTCCCTGCTGCCCGGGACGTCCTTTCCTTGGCTTCTGTCCACCTACTAAATCATCCTACAGGTTTATTTTAGATTAGGCATTCAGTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGTGACCGCATAAACTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAGACTCATGTGCATCGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATTAGCGTCTTTTAGTTCTCATCAAAAAAGTCCCTCAGCCCCACCACAAGGCTTCTCTGCCTTTTCTGTGCTCCATGGGGCCTGTGGGCCTCCCTCTGTTTGGGCACTTGTATCTGTGCCTCTGTCTCTGTAGGAGATTCTTAGGAGCTGATTGGGATTCAGGAAAACTTGCTTTGCGACTCCATGGACTGCAGCCCGCCAGGCTCGTCTGCCCATGGGATTTCCCAGGCAAGAATGCTGGAGTGGGTTGCCATTTCCTTCAGGGGATCTTCCCAACCCAGGGATCAAACCTGGGTCTCCTGCATCATTGCAGGGATTTCTTAAAGTCCAAACGTTTGCCCAAAAATATCCCGCTGCTGTGACACGCTTTCTCTTTTCCTTCCCCATTTGTCAGGCCAGGTTATGGCTAGGCAATGGCCATCTGGTGGTCTCTGGTGTTTTTAATAGCCTCAGAGGCAGAGTAGGCTAACTGCTAGCCTTTGGATGATCCCTGTGCAAACAGACTGATGTTTTCCCCACCTCATTCAGGTGTAATAGTGGGTAGAATGGGTCCCTGAAAACAGAGTTTTAGATGATAGGTTCTTCTTTTTCTGTGTAACATGACAAGTTAGTAATTTTCATTCAGTGGGATCTTGTACACTTATTTCTTAAACTTGATGGAACTGTGCTGAGCATACACCAGTGTTGTCATTTTCCAG
Seq C2 exon
GCCAAGAATCACGCAAAGCAGGGGATAAAGGAGGTGAAGAGCAAGCTTAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012433:ENSBTAT00000016502:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development