GgaINT0039601 @ galGal3
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2459854-2462467:+
Coord C1 exon
chr8:2459854-2459922
Coord A exon
chr8:2459923-2462410
Coord C2 exon
chr8:2462411-2462467
Length
2488 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
ACGGCCTTTTAATTTTCTAGGCA
3' ss Score
9.07
Exon sequences
Seq C1 exon
AAAGGCGGTGCACTGATCAACACAGCAATGACCAAAGCCACGCCGGCTGTGAAAACAGCATACAAATTT
Seq A exon
GTAAGATATCTATTTCAAATAAATTATATGTAAAAATGCCTTCCCTACCTATCATCTGATTCTTCCTCAATACTTAAAAACTTAAACATTTTGTAAATACATTGCAGAAAAGCACGTCAGCCTGCCAAACACTTTTAGCTTCATTCATTTTCTCAACGAGCACTGGGTTTTAGAATTGATTTGCTATCTCCCAGATAGGTCGTACGTAAGATCAGGCACTTCCAAAGAATCACTGTGCTGTTATCTCAATCACAGTACTTATTTGAATATCATTTAGGAAGTTGTTGCACAGCTGTGAAGTCTTTGTAACATGATGAGAATGTCATCAAAATACGGACTCTGAAAATGGAAATTCTCATTTGCACGATGGTCTGGTGACATAGCTCATGCATTGCGAAGTTGACATGAGTCTAAAACATTTTGTAAATATTACATTTAATTGTAAATAAAGTGTTACAGTATATAGTTATATAGCCTTAAGGTGTGGAAGAAAGTCTTTTCTATTGAGAATGTCATTCAGGACAAATGGAGTCCTGTCTTACACAGATGTGATTTCTCTTTGCCAGTATGTGCTGCACTATTGTAAAGCCGTGGTAAAGCATCAGCAATGCATGCAGCAAGTCTTTTGTATCATCTGCTGTTCTAAAAATTGTCAGAATACTCACATTTAGCTGGATTTATTGCTTATATCTTTGAGCTTAAAAATATCTTGTTTTAAAAACATGCCTAACCAACAAAGCGTGGACATAGTTAAGGAATAGCCAGTATGAAAAAATCCCACAGGACAAAACAAAGCAAAGCAGTAGTTTAAAATGAAATGGGACCTATTTAGGGGTTAGATTTTAATTACCTGAGAAAAGACTTTTGGCTGCTTCTTTGCTTTTCCAAACGTTTCATTAATCGAATGCATAATAGATAGTCCTGAATAAATCAGACGATCAGTCTAAGCTAGTGTACTTCAAGTAAAGTTTTCAAAGAGAATTTTTAATTTGCTTCAGTTGAAAAACATAGCAGTCATGAAGAGAGAAACAGGTAAATAAATTAAATCTACTTCATATCTTGAACTCTTTCGTAATTTAAGAAATGGTTCATTAACAGGTTGGAAATTATATAAGAATAATATAATAAAGAATAATCTGGAAATTATTATTCTTTGGTTTGCATTAGCTTAGACTGTGATTACATGATCTTATCCCAGCTTTCAATTTTTTTAATAGTCCTTGATAATCAAGATTTTTCAAATCGATCTCATGTTCATTCCAAGGAGCTGGTAAAATTTTTGAGGGTCTGTGTGCCTGCGGTCTTGTCGTGTGTTTTCTCACACACTTGCACTTTGTGGAGCCACCAGAGAAACGGCATATGCACGTCTTTGGTTGCTAGATAACTGTCCTTGAGTAAATAATGTGATTGGTGCCATCCCTCAGAGTTAGAACAAAGTGCTCCTAAATGCATCCAAAAGCTGTGAATGTGAGCTGGAAAGTTTAAAGTGACTCTCAGGTTAGCATCTGCTACATGGCACCCCACTGTGCTCTCACTGAGCTTGTAGGTATATGATTTAAAGATGAAAACAACTCTCCGACCTCTTGAAACAAGAAAATGATTTTTTTTTTCCAAATTTCCGTGCACCGAAAAACATAGAAAAATAGGAGATTTCTGCATATTTTGGCCACTGACTATATTTTGAAGCATTCTATTTTCAAGACAACCTTGAAAACTTTTCTAGTTTATTCCTATATGAGCTATATCCAAGTAAGAAGAACACACTTAATATTAGGCTTAGTTTTTCTTTGTTGTTTTGTGCCCCTCACCTGTCCTTCTCTTCCCATTTTTTTTTCCCTCTCCATTTTCCTCCCTCCCTCCTCTTTTTTTTTTTCCGCATAAGAACACGGTATTCTGTATTGATAATTCATTTCTCTATTGAAGAACATTCTTGATTCTGTTTTCTATGCAACGGTGATCCTTAGCTGCCTATTTTAATACATAAGCAATTCTGCCCTAAATAGCAGCACTATTTTGTTCAGCAACGCTGGGCAAAATCTCCATCTGCATATGAAATCACTTCATTTCTCTTAAGATTGATGTTGCCCTGCAAGTTGCCAGACTGGAACACTGTAGCAGTCATCTTGAAAAATCTTAACATTTTTCCAATGTGCCTTACTGCTAAAATAGCCTTTGAAACTTAAAGGGCCGTTTCAAATAAAGGAGTGATGTTAAAGAGCATTTTCAGCCTGGCTTTAGTAATACCGGTGAGTTTTTGAGCACGTATGTTTTCACTGCATTGGCATGCATGTACCGAAAGAGCCCTATATATACTGACAAAGCATGAATGTATCAAATATCCTGACGAGGCACGTAGGACATTTGTGATACAGGTAATTGTCCTTCTTTATAGCTCCATGTGTGAAAAAAGGAAATAGGTACAGTAAGCGTGGCATCATAAAGTGTGTTGCATGACTACAGCGTTACATACGGCCTTTTAATTTTCTAG
Seq C2 exon
GCAAAAAACCACGCAAGGCAAGGAATAAAAGAAGTGAGGAGTAAGTTGAAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]