DreINT0056019 @ danRer10
Intron Retention
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23424571-23426420:+
Coord C1 exon
chr22:23424571-23424609
Coord A exon
chr22:23424610-23426363
Coord C2 exon
chr22:23426364-23426420
Length
1754 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTCCTTTTGTTTTTTGAAAGGCC
3' ss Score
7
Exon sequences
Seq C1 exon
CGGGAGAGGGCGAAACCAGTCGTGAAGAACTTTCAGATG
Seq A exon
GTAAGTTTAACCTCGGACTATATATAAAAAATGATGGATGGATGGATGGATGCATGGACAGAACGATAGATCATCATGGATGAATGGACAGAATGGAAAATATGGACGGGAAGACGGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAAATAGAAATAACCAGATATATAAACTTATATAAAATAAATATAACGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAATATTTAAATATTTCCCAAATTATGTTTAACAGAACAATGAAATTTTCACAGTATGTCTGATAATATTTTTTTCTTCTGGAGAAAGCCTTATTTGTTTTATTTCGGCTAGAATAAAAGCAGTTTTTAATTTTTAAACATCATTTTAGGGACAAAATTATTAGCCTCTTTAAGCTAATTTTGTTATCAATAATCTACAGAACAAACCACTGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAATACACCTACTGAAGCCTTTAAATGTCACTTTAGGCTGTATAGAAGTATCTTAAAGAATATCTTGTCAAATATTATTTACTGTCATCATGGGAAAGAGAAAATAAATCATTTATCAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGTGCTGAAAAAAATATTCTCTCAGTTAAACAGAAATTGGGGAAAATAAACAAGCAGTCTAATAATTCAGGGGGGCTAATAATTCTGATTTCAACTGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGACGGATGGACAGAACGATAGATCATCATGGATGAATGGACGGATAGACAAATGGATAGATAGATGGATAAATGGATGGACAGAACAATAGATCATCAAGGATGATTGGACGGATCAATGAATCGACGGTTCGACGGATGAATGGATTTATGGATGGATGGATGGATGGATGGAAGGGAGGGTGGATAGAACCATAGATTGATAGAATAACAGATAGATGGATAAATAAATAGATAGATGGATGGATGGATGGATGAACGGATGGATGGATGAACGGATGGATGGATGGATGGGAGGGTGGATAGAATCATAGATTGATAGAATAACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAATCTAAATAATATTTTTTTCATGGTTAATTATCATTTTCCTTTCATATTTTTCTTTCATCAACTGATTAATCTATTTCCTTTTGTTTTTTGAAAG
Seq C2 exon
GCCAAAGATCACGCGAAGCGGAAAATACGCGACATGAAGGACAAGATTACACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868:ENSDART00000160457:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.759
Domain overlap (PFAM):
C1:
PF0301110=PFEMP=FE(13.4=100)
A:
NA
C2:
PF0301110=PFEMP=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]