BtaINT0048030 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19220572-19221556:+
Coord C1 exon
chr7:19220572-19220659
Coord A exon
chr7:19220660-19221491
Coord C2 exon
chr7:19221492-19221556
Length
832 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGA
5' ss Score
6.87
3' ss Seq
AACCCTTTTCTGTCCCACAGAGG
3' ss Score
10.46
Exon sequences
Seq C1 exon
CAGCCCCAAGAAAGCACAGGCCCCCAGGACCCCTGGGGAAAGGGTCCTGCTGGGCCAGCCCTCCAGGGACCATGGGATCCACAGCCGA
Seq A exon
GTAAGAGCTGCCCCCTCTCCCATCCTCTGGACCAAGATTCCCAGACCAGGCCTGGGCTGGGGCTGAGGGGAGCAAGGCTGGGGCAAGCCGGGGAGGGACCGTGAGTCACAGGGGCAGGTGGCTGGAATCAGAGTAGGACTCAGCTGGCCTACAGTATGGACTCTGCTCTCAGGCACACTCAGGCCAATCTGGGACTTTCCCCTGTCTCTCTCTCCCTCTCCCTCTGTATGATTAAGTTTGTTGCTCTGAGCGTGTGCCTTTTGCTACATCTCAGTGATGGGGAGTCTGGCTTCCGCGGCCAGCAGTGGGGGAAGGGGGACTCTGTGTGTCCATGTGTGTGTGTGACTAATTGTGTGGGATTTATGTCAGTGTGAGGATGAAGCTCAGCGTGAGGAGGTCCCCATGTTTGGGACAGTGTGTCTGCACTCCCTCCCATCCTCTTTCTCTGTCCCCTAAGCCTCTGCACGGTGGGTGTGGGGAGAGGGCCAGGGGAGGAAGGCAGAGACTGCAGGCTTCCCAGGAGGATCAGGGCACACTGCCCTCTTTCCTTGGATAGGAAACCTGGGATCAGTCCCCAGGGCCCCATGAAGTCTTGGGGCAGGGCCTCGCACATATGCCCAGTGACCCGACTGGCTATGCAAGAAGAGGGGGGTATACTGGCTCGGCCACACACACACACAGTCTTACCTGGAGAGTCAGATCTTTTCAGGCAGACACAGTATAGAATCGCGCACACACACACATACACACACACACACACACAGTCACGCACATGTGCAGGCACACACACAAGCAAGTCCCTGGACCCACTAAACCCTTTTCTGTCCCACAG
Seq C2 exon
AGGGGGTCCCCCTGCCCTGTTTGATTGGTTCTTCGAAGCAGCCTACCCTGCCTCCCTGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]