MmuINT0048237 @ mm10
Intron Retention
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57076941-57078510:-
Coord C1 exon
chr17:57078390-57078510
Coord A exon
chr17:57077006-57078389
Coord C2 exon
chr17:57076941-57077005
Length
1384 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGA
5' ss Score
7.3
3' ss Seq
AGCCCCCTCACGGTCCACAGAAG
3' ss Score
5.29
Exon sequences
Seq C1 exon
AGGAAACTGAGCAGATCAGGGGCCCAGCCCCAAGCAAACACAGGCTCCCCCAGCCCCAGAAGCACTAGGGGAAAGGGCCCAGCTGGGCCAGCCCTGCAGAGACCATGGGATCCACAGAGAC
Seq A exon
GTAAGAGCTGTCTTCCCTCCATCCTGTGCAGCGAGATTGCCAGACCTGAGCCGGGGTGGGGTTGGGGGAGGGCAAAAAACAAAAAAACTGGGGCTACAGCAGGGGAGGGCCCAGGAAGCACAGCTACCCACTGACCAGAGGGGCTTCTAGGGACCTGATCAGGCCATTCTCTTCAATTTTCCTGGCTCTAGATCTGTGTAATGAAACCAGGGACTTTAGGAGTATGACGCTCCAGTAAGGGTGGGGTTTTTAGGAAGGTGATTTCCAGGAGGGGATAGTCAGTGGTAAGGTGTGAAGGGTATGGTGGGAAACTGTCTGTCAACCTTAGTGGGGGACTCATGGGTGTCTGTGTCCGTACAACAATGAGATGCTTCAGGTGCTCATGTCAGGGTGGTGTGTGTAACCAGATGGGATATGGTATCAGCAAGACAGACACTTCCCTTGGTTTCTGAAAGCTAAGGCCTCAGCATCTTCTGCTAGATGCAGTAGACAGCAGGGAAGAGCAGGCTGTGGGGCTTGCAGTTCAGTGCCAAGACACCTTGCTCTTCTTTCTCTGCTGAGTGTGGGCCGCACAAAAATCTCCCAGAGACACAAGGACAAGCCATAAATATGCTCAAAGGCACAGGGAAAGAAGAGATAGGACTCACATGATACACACCTGAGACTCTGCCGTTCTACCCCACAGATTCAAGAGACAGGCACCAGAAAGAATCATAAGTATGTTCTTTTTATCCAAGTGCTTGTTACAGGCAGACACACTGTCACAGGCATGCCTTTATCTCTGACTCCTCTTGCTACCTTTTCTCTGTCTCTGTCTCTGTCTCTGTTTCTCTCTCTTCCTCCCTCCCTAACTCTCTGTCTCTCTGTTTCTGTGTCTCTCTGTGTCTGTGTCTCTCTGTGTCTCTCTGTGTCTCTGTGTCTCTCTGTGTCTCTGTGTCTCTCTGTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTTGGTCTGTCTGTCTCCCCCTGCCTTCTCTCTCCTCTCTGTCTCTAGCCCTCTCTTTAGAAACAGGGTCTCAGTATGTAGTTCTGACTAGCCTGGAACTCCTATGTAGATCAAGCAAGCCTTGAACTCACAGAGATCTACCTGCCTTTGCCTGGGGGTTAAGGGTACAGCCACCATGGCTTTCTCTCTTTTTCCTTCTCTTCTCTGACCCCGTACTTCAGCAGCATTCACACCTGGCTCCACCCCTCAGGGGGCCCACACCAACACACCTAGTTACACACGAGACAGGGAACAGGAAAACAGAAGCACACAGATACAGACTCAGAACACACACAAGCTAAAGCCCCCTCACGGTCCACAG
Seq C2 exon
AAGGCATCCCCCTGCCATGTTTGACTGGTTCTTTGAAGCTGGCTGCCCCAACTCCCTGGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668:ENSMUST00000011623:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types