RnoINT0046437 @ rn6
Intron Retention
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9970209-9971634:+
Coord C1 exon
chr9:9970209-9970225
Coord A exon
chr9:9970226-9971569
Coord C2 exon
chr9:9971570-9971634
Length
1344 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
AACCCCCACCTGGTCCACAGAAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
ATGGGATCCACTGAAAT
Seq A exon
GTAAGAGCTGTCTTCCCTCCATTCTGTGCAGCAAGATTTGCCAGATCTGAGCCTAGAGGAGGAGTGGGGGAGGGGCAAAAAACAAAAAAACATGGTAGCTGGGCTACGGCAGGGGAGGTCCGGAGAGTACAGTCACCCACGAGACCCAAGTGGCCTCTCGGAGGACGCTGATCAGGTCAGCACAGTCCCTCTTCCAATGTTGCCTGGCTTCTGATCGTGAATGGAAAGGCAGTGGACTTTAGGAGTTATGACGCCCTGGTACCGGCAGGGGATGTTAGGAAGGTGGTTTCCAGGAGGAGATAGTCAGCCGTGGAGGTGTGAGAGGCCTATGGTGAAGAGATTCTGTCAACCTTAGTGGGAGGGAACTCAGGGGTGGCTTTGTGCCATCCAACACATAAGATGCTGGAGGAGCCATGTCAGGGTGCTGTGTGAGAACTGGATGTTGCCATCCCTTGGGTTCCGGAAGGCCAAGGCTTCAGCATCTTCTGCTAGGATGTAGTGTACAGCACAGAAGGCCAGGCTGTGGGGCTTGCAGCTCAGTGCCAGAGGGTACTTGCTCTTCTTTCTCTGCTGATGTGGGCCCCACAAAACCTCACCAAGGACACAAGGGACAAGTCTTAAATAGGCTCAAAGGCACAGAGAGAGAGAGAGATAAGACTCACACGATACACACCTGAGGCAGTAGCAGTTTCCGACTGCACAGATCCAAGGAGCGGGCACCAGAAAGAAATCCTAAGTATGCTCTTTTTATACTAGTGCTTGTCACAGGCCTGCCTCATGTCTGGACATCCTCTTGCTTTCTCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTATCTCTCTTTTCTCCCTCCTTCCCTCCCTCCCTATCTCTCTGCCTCTCTGTCTCTCTCCCTATCTCCCTATCTTTGTCTCTCTGTCTCTCTCCCTATCTTCCTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCCTAGCCCTCTCTTTGAAAACAGGGTCTCAGTATATAGTCCTGACTAACCTGGAACTCATATATAGACCAAGCAAGCCTTGAACTCACAGAGATCTACCTGCCTTTCCTTGAGGTTAAAGGTACGGCCACCATGCTGGTTTTCTCTCTCTCTTTCCTTCTCTTCTCTCCCCCCAAGCTTCAGCAGCATTCACACCTGACTCCACCCCTCAGGGCACCCACGCCAACACACCTAGTCACACACATAAGGAACAGAATAGGGAACACACAAACAGAAGCACACAGACGCAGACTCAGAACACACACACACACAACCTGAAACCCCCACCTGGTCCACAG
Seq C2 exon
AAGGCATCCCTCTGCTGTGTTTGACTGGTTCTTCGAAGCTGGCCGCCCCAACTCCCTGGAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050:ENSRNOT00000075215:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]