HsaINT0046715 @ hg38
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6479987-6481808:-
Coord C1 exon
chr19:6481679-6481808
Coord A exon
chr19:6480052-6481678
Coord C2 exon
chr19:6479987-6480051
Length
1627 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
3' ss Seq
ACCCCTTCTGCATCCCACAGAGG
3' ss Score
9.29
Exon sequences
Seq C1 exon
GTTAAACTTCCTCTCTCAGCCACACAGGAAGCTGAGCCGGCTTGGGGCCCAGCATACACAGGCCCCCAGGACCCCTGGGGAGAGGGCCCCGCTGGGCTGGCCCTGCAGGGACCATGGAATCCAGAGCTGA
Seq A exon
GTAAGAGCCACCCCATCCCTCATTCTCTGGTACAAGATTCCCGGGCCAGGCCTGAGCCGGGGCAGAGGGGAGCTGGGGCTGGAGCAGGCCCGGGAGGTGCAGTGACCTGCCAGGGCAGGTGGCTGGAATCAGATACTCCATGGGCCTCCGCTATGACCTTCACTCTGGGACAGGCCACTCTCGGTCCCCTCCTCTCTCTCTCTCTCTCTCTCTCTATCCAGCTCCTGTGATTATGTCTATAGCTCTGTGAATGCATGTACCCCTCTGAGCTTTGTCCTTGGTATGTCTGAGTGATGGCTTCAGGGGGTCCACAGGGCGGATGATCAGGGCAGAGGGGAGGCTGGGTGTTGGTATGAGTGGGTGATCGTGTGTGACTTGTGTCGGCGTGAGGGTGAAGTGCTGGGGTACCCATGGTGGGGACTGTGTGTGCAACTGGGCGGGACAGTGTGTGTGCAGCTGATCTCCCTCTAGATCTCCCTGTCTCTCTCCTTGAGCCCAAGGCTGCCTCTTCTGCTTGATATGGGGGCAGAGGAGGAAAGCAGAGATTGCAGGGCTTACAGTAAGTACCTAGGTATCCTGCCCTCCTTTCTCTGATGAGACATGTGGGACCAGCCACGAGGGTTCTATGGGGTCTCACACACAGAGACACACAGCCAGCCCACAAGGATCCCACGCGGTTACCCAGTGACACTCACAGCTGTACAGGAAAATATAGATGTCATTCACTTGCTCGGGCACACACACTCACATCTATACAAGAAAATATAGATGGCATGGCTAGATGCAGTGACTCAAGCCTGTAATCCCAGCAATTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTTGAGAACAGCCTGGCCAGTATGTGAAACCCTGTCTCTACTAAAAATATGAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGTGGGGTGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGTACTCCAGCCTGGGTGACAAAGCAAAACTCCATCTCAAAAAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGTGGGTGGGTGGATGGATAGGTGGGTGGGTGGGTGGATGGATGGATGGATGGATAGACAGAGACAGACAGACAGACAGATAGATGGATATATATATAGAGAGAGAGAGATGTAATTCACTTAGCTTGGGACTGCACGGGCTGTCCTTCATATCTGTGCAGTCTCATGCCACAGATATAGGAGACAGTCTCATCTTTTCAGGCAGACAGCAGACAGGATCACACACACACTGCCTGCTCACAAAAGCCATGCACTCAGCCACACACAATCATACACAGCCACACACACACAGTCACACTTTCTCACTCCATCCTGTACTTGTGTGTTCAATTAACACTGCTGCACACACAGCCTCACACAACCACACACTCACAGCCACAAACCCCCAGAGTCATGCACATGCCGACGCACCTTGTGGCACATGCACACACAACCACACTTGTGTGCAAAGTGGCAGACACAACCACACATGCATAGAAGCAAGTCTCTGGACCCCTTCTGCATCCCACAG
Seq C2 exon
AGGGGGCTCCCCTGCTGTGTTTGATTGGTTCTTCGAAGCGGCCTGCCCTGCCTCCCTGCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744:ENST00000381480:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development