HsaEX0019127 @ hg38
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6479859-6481798:-
Coord C1 exon
chr19:6481679-6481798
Coord A exon
chr19:6479987-6479990
Coord C2 exon
chr19:6479859-6479902
Length
4 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTGCCTCCCTGCAGGAG
3' ss Score
12.41
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTCTCTCAGCCACACAGGAAGCTGAGCCGGCTTGGGGCCCAGCATACACAGGCCCCCAGGACCCCTGGGGAGAGGGCCCCGCTGGGCTGGCCCTGCAGGGACCATGGAATCCAGAGCTGA
Seq A exon
GAGG
Seq C2 exon
ATCCCCCCATCCTGCGGCAGTTCCCTCCAGACTTCAGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0345613=uDENN=PU(23.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACACAGGCCCCCAGGA
R:
CCTGAAGTCTGGAGGGAACTG
Band lengths:
116-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development