BtaEX6038710 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19220572-19221682:+
Coord C1 exon
chr7:19220572-19220659
Coord A exon
chr7:19221492-19221556
Coord C2 exon
chr7:19221639-19221682
Length
65 bp
Sequences
Splice sites
3' ss Seq
AACCCTTTTCTGTCCCACAGAGG
3' ss Score
10.46
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAGCCCCAAGAAAGCACAGGCCCCCAGGACCCCTGGGGAAAGGGTCCTGCTGGGCCAGCCCTCCAGGGACCATGGGATCCACAGCCGA
Seq A exon
AGGGGGTCCCCCTGCCCTGTTTGATTGGTTCTTCGAAGCAGCCTACCCTGCCTCCCTGCAGGAAG
Seq C2 exon
ATCCCCCCATCCTGCGGCAGTTCCCCCCAGACTTCCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(23.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCAAGAAAGCACAGG
R:
CTGGTCCTGGAAGTCTGGGG
Band lengths:
132-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]