HsaEX0019127 @ hg19
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6479870-6481798:-
Coord C1 exon
chr19:6481690-6481798
Coord A exon
chr19:6479998-6480062
Coord C2 exon
chr19:6479870-6479913
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTCTGCATCCCACAGAGG
3' ss Score
9.29
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACACAGGAAGCTGAGCCGGCTTGGGGCCCAGCATACACAGGCCCCCAGGACCCCTGGGGAGAGGGCCCCGCTGGGCTGGCCCTGCAGGGACCATGGAATCCAGAGCTGA
Seq A exon
AGGGGGCTCCCCTGCTGTGTTTGATTGGTTCTTCGAAGCGGCCTGCCCTGCCTCCCTGCAGGAGG
Seq C2 exon
ATCCCCCCATCCTGCGGCAGTTCCCTCCAGACTTCAGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(23.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGAAGCTGAGCCGG
R:
CTGGTCCCTGAAGTCTGGAGG
Band lengths:
153-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)