MmuEX6078694 @ mm9
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57216241-57217933:-
Coord C1 exon
chr17:57217813-57217933
Coord A exon
chr17:57216364-57216428
Coord C2 exon
chr17:57216241-57216284
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGCCCCCTCACGGTCCACAGAAG
3' ss Score
5.29
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AGGAAACTGAGCAGATCAGGGGCCCAGCCCCAAGCAAACACAGGCTCCCCCAGCCCCAGAAGCACTAGGGGAAAGGGCCCAGCTGGGCCAGCCCTGCAGAGACCATGGGATCCACAGAGAC
Seq A exon
AAGGCATCCCCCTGCCATGTTTGACTGGTTCTTTGAAGCTGGCTGCCCCAACTCCCTGGAAGAGG
Seq C2 exon
ATCCCCCCATCCTGCGGCAGTTCCCTCCAGACTTCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(23.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGATCAGGGGCCCA
R:
TCCTGGAAGTCTGGAGGGAAC
Band lengths:
153-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: