RnoEX0027137 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9970209-9971769:+
Coord C1 exon
chr9:9970209-9970225
Coord A exon
chr9:9971631-9971634
Coord C2 exon
chr9:9971726-9971769
Length
4 bp
Sequences
Splice sites
3' ss Seq
GCCGCCCCAACTCCCTGGAGGAG
3' ss Score
-2.01
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGGGATCCACTGAAAT
Seq A exon
GAGG
Seq C2 exon
ATCCCCTGATCCTGCGGAAGTTCCCTCCAGACTTCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(23.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]