BtaINT0048094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020172 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr3:32331953-32335238:+
Coord C1 exon
chr3:32331953-32332130
Coord A exon
chr3:32332131-32335196
Coord C2 exon
chr3:32335197-32335238
Length
3066 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGA
5' ss Score
8.65
3' ss Seq
CTGTCCCATTTTTATTTCAGGTC
3' ss Score
11.39
Exon sequences
Seq C1 exon
CACCCTGTCTCAGTGCATCCATGCTACTGCCGCGCTGCTCTACCCCTTCAGCTGGGCCCACACCTACATACCTGTGGTCCCCGAGAGCCTGCTGGGAACTGTCTGCTGCCCCACTCCCTTCATGGTTGGAGTCCAAATGCGCTTCCGGCAGGAGGTTTTGGACAGCCCCATGGAAGAG
Seq A exon
GTACGATGCAGCAAGAAGGGGGCCTGATTTGGAGCCAGGCAGACCTGGATCCAGATCCCACCTCTGCTGCTAATAGCTGTGTGATTTTGTGGCAAGTTGCTTAACCTCTTTAAGCCTCGGCTTCCTCATCTGTAAAAATGGAATGGCAACACTTAGACCCTAAAGATCCTAGGGGAAAAAAATCAGCATAAAGCACCTAGCCTGGTGCCTGACATATAGCTGATACTCAGTAAGTGCCTGCTCCCTTCTCTGAATGATTTCCCTTTGGACTTAAGGGGCAGCACATGGCTTATTTGGGCTTCGCCCAACTGTACTAGGCTAGCTAGTCCTAGTGAGCAGGCCCTGGGTGTCTCATTTTTCTTCTGAATGGATAAGCACAGCTGGTCTGTACAACACACACCCCACTGGAATTTATTCACATTGCTTGGAAGTGAACTAACAGTCTTCCTGGAAACAATGAGTTTTGAAAATGCAGATTTTTTTGTAGTAGGGGTCATCCTTCCAATTAGCTTAGAGCTCAGTTGGTTAATGAAAATATTGGTCCAAATCCCCTTTGATTTTGTCAGCCTCTTGAGTCTTGGCAGTACCCCAGATACACCAAAGAGCTCGGTGGTGAGAATGGGTGTTAATTACATAAACCTACCTCCAGTGGTGGAAAAACAACTTCTGCTTTGCTTGAGTTGTCAATAGAAACTTTCAAGAGATAGAACATTACTATAATCTCAAGCCAAAAGAGCTACTTAGGTTGGTCTGGCTAACCACCGACTCCCTCTGTGTAGACAGAAAGGGAAGAGGCAGAGCCTCGAAGTAAGCTACTGGAGGCATGTGACAAGTCCTAGTGGGAGGACTTCCTCCATTTATATAAGAAATAACCAAGGTCCAGAGAGCTCAATCCACTTATCGAGGCTGCACAGGCAATGCCTGAATCTAGCAGAGACAGAAGCAAAGCACCTCTTCCGCAGTGCTGCCGGGAAGAAGCAGGCTGTTTCTCTTCCTTGTCTCCCCAGCCCGCCCTGCCGTCCTCAGAACTGCTGAGCACACATGCCCTTTGAGCCAACCTCTGCCTTGTGACTAACTGGGACAGAGTGTCAGCCCCATGTTTAGTAATACGACTCAATAAGTGTCCCAATCCCAGAAGTTATGAAACTTCCTGATGCTGCAGCGCCATCTTCTTGGACGCTGTGATTTCTCCCCCAGTGGCCTGGCGGGAAGACATCCCAAGGCTAGTCAGACTCCAGCTTGTGCTGTCCAAGAGCCCCAGCTGATGAAATGGGCAGAGGGTAGGGATGGGAGACGGCTAGGGGTCAGGGAGAGAGATGGGGCATTCTTTGATTCCCAGGTCAGCTCTTTGGAAGGGCTCCTTGGACAGACAGTAATATACTCAAGTACTGGAAAGATTTCTGGGAACAACTTTAGAAAGAAATTCTTTACACATGCTCTTACCTCCCAGCCCACAAAGTGAACAGCCTGCCCTAAATGAAGGCATCTCAGCCTATGTATACAAGTGGTTTCACGCCTGAACTAGTTCAACTTTTCTCCCCTGATGATGGATAATTACAGTGCCTGCTCTGTCTTTTGGCACACATTCCTATTTCTCTCTTCTTTTTATTTGGGAGAAGGGTGCATGGAGGGATCCCTCACCAGAGGGACCCAGCAGGCATTTAAATGGCCAACACAGGCTTTGGGGGATTATGATAAACTGCTGAGCACCTGCCTTGCCTAAAGGAGGCAGCTGTAACTCAGTTCCCTCTGAATGTGGATCAGTGTTAGAACTCCTGACTTTTCCAGAGAAGCCCTAGATCCAAATTCTGTGTGGAATGTTTTAATTTAAATATTGGAAACTAATTCAATGATTTGAAAATTCTCTGAGTCTCAAAGAAACAGGTCTGTAGGTTGGAATCTAACTGGCAGGATGCGTATTGATCATCTCTAGTCTAGACTAAAGGCCCCTTAGGCAGTGATGGAGCTGATACTAGAACTCAGGTTCCCCAAGTTCCAGCCCTGTGCTTGTCCTACCTGCACCCTACCAACATGTGATTACTGCCTCTCCTTCCCTCCTCCTTTTGTCCCCAGGCTTATTTTCTCCTCTCGCTCTTCCCTGCTGGAAGGTCCAAAGCTCTTGTGGGAATTTTAATAATTTTTACTTATATATTTTTGGCTGTGCTGGGTCTTCGTTCCTGTGTGGGCTTTTCTCTTGTGGTTGCAGAGAGTGGGGGGCTACTCCATAGTTCTGGTGCATGGGTTTCTCATGGTGGCGGCTTCTCTTGTTGCAGAGCACAGGCTCTAGGGCATGCAGGCTTCAGTAGTTACAACACCTGGGTTCAGTAGTTGTGGCACATGGGCTCAATTGCTCTGTGGCATGTGGGACCTTCCCTGAATCAGGGATCGGACCCGTGTCTCCTGTGCTGGCAGGCAGATTCTTTACCACTGAGCCACCAGGGAAGCCCTGTGGGAGTTTTAAAAATGGAATTCTAGGCAATTGTACATAAAGTTGTTGTAAGCATTAAAAAAAAAAAAAAATCAAAAGATGCCCATCCCTGTCCTAAAGCTCACCAGAGGGACGGGAACTGAAGAACTGTAGGAAGAATGATGCGCTACCAAAGACAGCACAACACAGGCTTGGAAACTGGCGCTACTCTTTGATAGCGGTATCACCTCAGGCAGTTTAACTTCTTTGGGTATTTCCTCACCTGAACAGGCACAGTATCTGCCTCTACAGGAGCATTGGGAAGATTAAATGAGATAAGATGTGCAGAGCACAGTGTATGCCATTTAATGCTTCATACATAGAAGTTATAACTATGATCAATGCTTTTTTATTAAGAGAGTGACTGGCTTCATTTACCCATATTGTATACCCCATCTTCCTTAGCTCTCTCCCCTATTTCCTGCTTCCTATACCCTCATACCCTTTTCTCAGGAAAGAGTGGGTGGTGAGAAAGGAGTGTAGCAGACAGGAAATGAGAACTGAAGATGCTGATTTTGTTGTTACTTGGGCTGAAAGGTACAGCAACAGGCAGAAACAGAGAAAGGGGAAGAAACCAAGCTGTCCCATTTTTATTTCAG
Seq C2 exon
GTCCTGTTGGTGAATCTTTGTGAAGGAACCTTCTTAATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020172:ENSBTAT00000026865:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]