DreINT0056052 @ danRer10
Intron Retention
Gene
ENSDARG00000058666 | dennd2da
Description
DENN/MADD domain containing 2Da [Source:ZFIN;Acc:ZDB-GENE-061013-542]
Coordinates
chr8:12957062-12960331:-
Coord C1 exon
chr8:12960160-12960331
Coord A exon
chr8:12957113-12960159
Coord C2 exon
chr8:12957062-12957112
Length
3047 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GAATTCATCTACTCACCCAGCTG
3' ss Score
2.74
Exon sequences
Seq C1 exon
TACATTGTCTCAGGTGATCCACGCTGTGGCTGTTCTCCTGTATCCATTCATCTGGCAGCACACGCTTATTTCCATAGTTCCTGAGATCCTCATAGATGTTGTGATGGCGCCCACTCCATACCTGCTAGGGGTCCAGAAAAGACTCGCCCATTTAGTCACCGACCAGACCGAT
Seq A exon
GTGAGTGACCACAGCTTAAAGGGTTAGTTCACCCAAAATATGTTAACTCTGTTATTAATTACTCACCCTAATGTCATTCCAAACCCCTGAGACCTAAATATCTAAAAGTATTTTTAAATCTGAGAGCTCTCTAGTTCGTCCCAACTTATTCAAAGTCTAGAACAATACCAAAAAACATCCTCAAAACATTAAGCCATATGCATTCAGTACAAGCGGCAACCTCCCGCTCTCCCTCAGGAAGCCAATACGGAAGTAACTAAAACTGCAATTCATCCGAAATTCCGCTAGTCCTGGCCTCTCCTGGCTCCAAAATAGAGCAAATTTCAATTTAGCCCACTGTTAGAATGGCCAACTTTACAGCAGAAAAAAAGGTGTTTACAGCCTGGTACAAAAAAAGATTTTGGTTAATACAGCTAATATTACCCTTCATGACAACTGTGAGGGGGTGAATTTTTTTATAACTCATCCGTTTCCTTTATATTAAGTATGCATAATTAAGGGCGTGGCCACTTGAGTGACAGCTCTCGTTGGTCGCCGTCACGTCACCTCAGCTGAATCCTTCAGATTAGCCACTGAACTCGGCATATTTATCGTATTTCTGTGTTGTTTTATGTGGCTTGACACAGTCAACTGCCTTTTGGACTTGTTTCCTACAATTATTAGATGGCATGGCATGCTGAGGGCACTTAATTGTGCTCACAAACCATTCACGTGGCCTCCGTTTCCCATGTGAGTAAAGTTATATACTTATATACCATCTCTATACATGTATTTGTTTTATTTAAGATAATTTATCGTTTATATTTATATTTAGAGCTGTAATGCACTCCAGAATCTGTCAGATTGATTAGCTGTAGGCTCTAGATCAGTCATCTGAAGTGTTGTCATACAGTGTTATGCTGGATTTCATCAATAGTCTTACATTAACTAACACAGACTATATCTGAAGTTTTTGGAAGTAATTTGCGTTTTCCTCCTGTTGAAAAACGTCATAAGAACAATGTTTAGTGGCTCAATGTATCACAGCAGTGTTTTTAAAAGTCTAAACACTTTGATACAGTATACAACCAAGCACAAGTGGTCAGAATACAAACGAGTCACAGGTGATAAAGTATTAAGCGTCCTCCCAAAGTAAAGTGTGTCTGAACCAGGTCCAAGCTAAATGCCAGCAGGTGTCTGTAGCTCCGCTCACTCTCCGCCTCTTTGCCCTTGTTTGGTATCCCGCCGTGGGTGTGATGACGCGCGAACAAAATGGCGACGGTTGGCTGCGCCTACTTGTGGCTTCTTTTGCGCTCTTTAGAAACCTATGAGTGACTTCACAGATACTAGGTCCATATATTTTACAGTCTATGATTCAGTATAGGACTGGGTGATTTATTGAATTAATTAAGTAAAGCACATCGTGCATATCTTCTCAAGAAATCAAGGTGTCCTTTTTTAGTAAATTTCCAGAATGCCAGATGGTGCTCTTGCTGAAACCAACAAATCAGTCCAAATACACACAAAGAAACCAAGGAAACCTTGCCTTGCCTTGAATTTCTGAACAAACTGAAAAAAATGAACTGCTTTCATTGACTCAGCGTGATTAATGATGAGAAGGCTATGGAATCATCTCACAGAAGCATTTATTCAAACACTTAAGGCTGGGCGATATTGCAAAAAAAAATCACGATATCATATTTTATATCAATATCAATAATTATCGGTATCAATAATTGTTGAATTTTTTTTAACAAAACATTTAGGATTATTAGTTTTTTAAACCACTTTATTTTAAATTACCAACATTACTAAGACAAATAGTTTTAATAGTTAAAAACAAACATTTTTAAACAAAATCTAATAATAAAATATGTGTAAGTGTTAAAGAGACTCTTAAACTTGATTAATAAAATGTTACAAAGTATGTGCAATTGTACAGTTAGATCAACATCTGTAAGGTGTCAATAATAATGATGATATTGTAAACCTCAAACTCTGTCAACAAAACTAATTATGATAATCAAATCTGAGCTTTTTAAGTAAAGGAACTAACCATCGTTATTCAAATACATACTGCAACATTACAAATTGTGAAGTTGAATGACTACATTACCCATATGCTAAAAAAATCTTTCAGATGGGGAGCAGGCTGGGATGCATGAGAAAAGAAACCAAAAAGCCACTCTGGCAACATCATTACATCCTTTTTTATTTACAATCTCCTCACTGCTGCCTGCCACCTCACTCATTTATGCATGTGTTGTTATTCTGACCTGAAGTGACAAGCTCGAGTCCAGTTTCCTTCACAATTTTCTATACTCAACTTTAGTTAGATAACGAGTTTGGAGTAAAAACATGTTATTATATGTTGTAATTTCACATGCAGCTTTAACTAGACATTGAGAAGCAACACAAACAGACGTCATAATTGCAGAAAGATTATCTTGATGTCATTTTAACACAGCTGGCGGATTACTAGAACCGGATTTACTAACAAAATGTGCATGGAAATAACCTCGATTAAACTGCCCAGCTTGCAGGGCATAAAACAAATGGCAGAGAAATTGGCGGTTCATTTTTCTGTGGCGACCCCTGATAAACCCTCAAGCTATGAGAATAAATTTGTGCGCACATAAAACAAAAATAACTTTATTGAATAGTTTCTTCTCCTCAGTGTCAGTATATTGCGCACGTTCATGAACTGATGTATATCTAACATCCACTTGCAACTTCTTGTTCAAATTAAAGCACAGGAGCACCCGAGGTATACGTCAGCAGCGAGACCAAACGCAACACGCATAAAGAGAACAGCACTCTGGTGAACATACAATAATATTCTGAATTAGTCAGGACTGTTACTGTTTATGTAGGATGAGAGAGCTCTCAGATTTCATCTAAAATCTTCATTTGTTTTCTGAAGATAAACGAAGGTCTCTGGAAATTAAATTGACATGAGGGCGAGTAATTATTGACCGACTTTTTGTTTTTGGGTGAACTAATGCTTTAAAACATTACAAGTCTTTTATATTTGTAAAGCTGACATCTGAATTCATCTACTCACCCAG
Seq C2 exon
CTGCTTATTGTTGACTTGTCAGAAGGCAGGAAGGAGACGTTTATCAAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058666:ENSDART00000140969:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.1=100)
A:
NA
C2:
PF0214116=DENN=PD(4.4=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]