GgaINT0141477 @ galGal4
Intron Retention
Gene
ENSGALG00000000154 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr26:1017661-1018045:+
Coord C1 exon
chr26:1017661-1017838
Coord A exon
chr26:1017839-1018003
Coord C2 exon
chr26:1018004-1018045
Length
165 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
TGCTCTGTGCTCTCTTGCAGGCT
3' ss Score
12.09
Exon sequences
Seq C1 exon
TGTCCTCTCACAGTGTATCCACGCCGTGGCTGCTCTCCTCTACCCCTTCACGTGGGCTCACACCTACATCCCTGTGGTCCCCGAGTGCCTGCTCGACACCGTCTGCTGCCCCACACCCTTCATGGTTGGCATCCAGAGGCGGCACCTGGAGCGGGTGCTGGAGCAGCCCATGGAGGAG
Seq A exon
GTATTTATTGCAGGCAGGAGGGGTGGAGGGGTCTGGCTGCAGTGCTGGGTTCAGCTGTGACCCTACGCTTGTGCTGGGTGGGAAGCAGCGATGGGGTGGGTGAGAGTGCAGTGCACATCTTGGTGGCTGTGCTTGCTCAGCTCATTGCTCTGTGCTCTCTTGCAG
Seq C2 exon
GCTCTGATAGTTGATCTGTGTGAAGGGAAGATCCTCCGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154:ENSGALT00000000210:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACAGTGTATCCACGCC
R:
CGGAGGATCTTCCCTTCACAC
Band lengths:
212-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]