HsaINT1010903 @ hg38
Intron Retention
Gene
ENSG00000162777 | DENND2D
Description
DENN domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr1:111189212-111192317:-
Coord C1 exon
chr1:111192140-111192317
Coord A exon
chr1:111189254-111192139
Coord C2 exon
chr1:111189212-111189253
Length
2886 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CCAGTCTATGTTTATTTCAGGTC
3' ss Score
9.16
Exon sequences
Seq C1 exon
CACCTTGTCTCAGTGCATCCATGCTGCTGCCGCACTGCTCTACCCCTTCAGCTGGGCGCACACCTACATCCCTGTTGTCCCTGAGAGCCTTCTGGCCACCGTCTGCTGCCCCACCCCCTTCATGGTTGGAGTACAAATGCGCTTCCAGCAGGAGGTCATGGACAGCCCTATGGAAGAG
Seq A exon
GTATGATGTGGCAAGAAGAGTGCATGATTTGGAGCCAGGTAGAGTGGGATTCAGATCCCAGCTCTGCTGCTTACAGCTGTGTGATTAGGGGCAAGTTACCTTACCTCTTTAAGCCTGAGCTTTCTCATCTCTAAAATGGGGATAACAGTGTTCACTTCCTAAGGATTCTGGGGGAAACCACCTGCCTAGAGCTCCTAACCTGGCACCCGACACACAGGTGATGCTCAATAAATGCAGGTTCCCTTCTGAAGGATTCCCCTTTAGGCATAAGGGGCAGTGGATAGCTTATTCAGGGGTGAGCAGACTGTTCTGTGCCAGCTGGCCCTAATGAGCAGTCTTCGGGGTGTCCCATCTCATCCAAATGTATGACACAGCTGGTCTATACAACACACACCCCACTGGAATGTATTTGAATTCCTTGGAATTGAGCTAACATGGCCCTCTGGCAAACTATGAGTCTTAAAAATGCAGATTTTTGCAGCAAGTCATCTTTCTGAGTAGCTCAGAGCTAAGGTGGCTAATGAGGATATAGGTCTGAATCCTCTTTGATTTTGTTAGCTTCTTACATCTTGGCAGTGCACCAGACACACCAGAGAACTCAGTTGTGAAAATGGGCATTAAAAGCGTAAATCTATCCCCGCTGTTGGAAAAATAACTCAAAACATGTGCTTTAGAGTTGTCAGTATAGGGACTTTCAAAAGATAGTATGTTACTGTATCTCAAGCCAGAAGAGGGACTTGGGAATGTCTGCCCTGGCCATAACCATTGACTCACTCCAAGAGATAACTGAGCTCCAGAGACTTATCCAAGGCCACATAGACAACAGTGGAACCTAGCACAGATAAAACCAAATCCTCTCCTATAGAAACCATTGCTGCAAAGTAAAGAAGAAGGCTGTGTTTCCCTTCTTTGCTCCACCGGCCCCCTCATCCTTCCTTAGGACTGCTGAGTACACATGCCCTTTGAACCAGCTTTAGCCTTGTGACTAACTGGGACAGAGTATTAGCCCCATGTTTAGCAATAAACATTTAAATGTTCCAACCCCAGAAATTATGAAACTTCTTGACTCTGCAGCTCCAGCTCCCTGGAAGCCGTGGCTCCTCTCCTGATGGCCAGTCAGACTCTGGCTTTTGGTAAGGGATTACTCCACAGACAATAATATGCCCAAATACTGGAAAGATTTCTGGGAACAATCTTGAAAAACAAATTATTTATACACACTCTCTCCCCCCAATCCCTCAAAGGAACAGTCTTCCCTTCATGAAGGCATCTGAGCCTATGTATACAAGTGGTTTCAGGCCTGGACTAGTTCAACTTTTCTCCCCTGATGACAGATAATTACAGTGCATGCTCTATTTTTTGGCATACTTTCCACTCTCTCCTTGTATTTGGAAGAAGGGACAATGGAGGGATCATTCTCTCTATCAAGACCAAGGGTCACAAATGGAAAAGAGAGGCCCAGCGGGCATTTAAATGACCAATACATGATTTGGGAAGTTACGGTAAACTGGTGGGAACATGCCCTGCCTAAAGCAGGCAACTGCTACTCAGTTCCATCTGAGTGTTGTCCTTTAGAAATGTGGACCCAGTGTTAGATCTCCTGACTTTTCAGGAGAAGCCCCAAATCCAAACTTTATGTGAGATAGTCCAGTTTAAATATTGGAAACCAAATCAATTACTTAAAAATACTGTGAAGATCAAAGAAACAGATCTGCTGGTTGGAATCAGCCAGCAGGATGCCTATTTGTAATCTCTGGTCTAGACTGAAGGCTCCCTGGGCAGTGATGGGGCCAGTGCTAAAACTCAGGTCCCCCAAGTTCCAGCCCAGTGCTTATCTCACTTGAGGACTGTAGACACATGGTCTCCTCACTTCCTTTCCTTTCCTCTTCCTGTTGACCCTGGGCTCATTTTCTTCCTTTGCTGTTTCCTGCTGGAAGGCCCAAAGCTGTGAGGTAGTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACCGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTGATTTTTTGCGTTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGAGAGGCAGGAGTTTTTCTAATAGAAAATTGTACATAAGATGTTGCAAGCATGAAAAAAATAAAAAGATGTTGGTCTCTGTTCTAGAGAGCAGGGAGTTGAAGGGGAATTGTAGAGAGAGGAATGCAATCTCAAGAATATCAGTCTAGGCTTGGAAAAAAATTGGTTCTCTTATTAGCAGCATAGTATGACCTCGGGCAGCTTCTTTGGGTCTGTTTCCTCATCTTCAAAATGGAGATTGTATCTGCCTCACGGGACTGTTGCTTGAGATCAAACGTGTAAAGCACTTATGTGAACAATGTACTAAATGCTCCATGTAGAAGCAATTTCTGCAGTCAATGTTTTATTAAGGGAGTGACTGGCTGTGATTTCTCCATCTTGTATTTCCCTTCTACCTTAGCTCTTTCTCCTACTCCCTTCCTACAAACACCCACACCCTTTCCTCAGGAATGGAACTGAGATCTCCAGAGGGGAATGGTGAGAAAGGAGAATGCTAGATAGGAAATGAGAACTGAAGATATTGATTTTGTTGCTACCTGGGCTGAAAGATACAGCCACAGGCAGAAATCAAGACGGTAAATCCTCTGGGGGTCTATGAAGAAAGAGGACCAGAGAAAGCCAGTCTATGTTTATTTCAG
Seq C2 exon
GTCCTGCTGGTCAATCTTTGTGAAGGAACCTTCTTAATGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777:ENST00000369752:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains