BtaINT0048631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102059414-102063746:-
Coord C1 exon
chr4:102063684-102063746
Coord A exon
chr4:102059488-102063683
Coord C2 exon
chr4:102059414-102059487
Length
4196 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
TTCTGCTTTGATTGTTGCAGTGT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GCAGCTTTTTCTGATTTCCTACAGAGAAGCTCTAGAGATTTATCCAAACATGTTAAAGTTGTC
Seq A exon
GTAAGTATTGCACGTGTTGACTCATTTCGCTTTGAATGTAAATATCATGTCCCTAACGTAAACCCCAAATACCAGTTTATGTACTCAATCAGCGGGCTGCATAGAACTTGAACTGAATTGAGTGTGGTGTGTTCAGCCAACATTTAGGAGCATTAAGTTATGTGTTAGGCACTGAACAGAGGATGAAGTTAAATAAGATGGATGGATTTTGCTCCTGAAAAAACTCATGGTTTGGTCATGCTGAAGGGCACCTAACTCATGGCAGAACATTAGAATAAATGTTGCTATTCGACTGTTTGTGTCATATGCTGGTGGCACAAAAGGAGAAATGCAAACTTCCCCTGGTGTAGTCAGGGAAGTCATCAAAGCGAGGATGTTGAGCTGGGTCTTGAAGTAGAAATAGATGTTCACCAAACAACTAGCTTTATTCCCAGGCTATCTGAAGAGTCTTCATTTTAGAAAAATACTTTGATTTTAGTATTTTGTGGTCACTTACTCTCTAGCCTGGTCAAGGTCCCTTACCACTTAGGAGTTTTTCTGGCTGCTGTTTACTTCTGAATCTCTGTCTCAAGTTGGGGGATACTCATCTTGGAGGCAAGGGAGATGGGAAGTCATTTTTTTCTCTAAGAGATATATTTTAAAATAGCATATCATTAATTATTAAGAAAGATAAAGTGTTTCCTTGAAGTAAACAAGTTGAAAGAGGGAATGAGCATGACTGCTGCACATACCTGTATAAGTAAAGTGAAACATGAAACACAGAAAAATATACACATGAGGAAAAAGAAATGGGAATACAGCGATGCTTGGATTTACTGTGGAATGGATAAAGAATAGCATTTGTGACAGAAGGGGGTAGGATAAAAGGTATACATGCAAATAGAGAAAAATATATGACCTTAAACTAATGGATTTATAGAGGAATACAGAGGAGCCTAAAATAAATATTCAATTTTCTTGACACCAATAAACCACATACAAGACACAAATCTCCTAAATCATTTGAAACAAAGACATTACTACTAACAGCCTTTGGCATCGCTTTCAGATGTTTCAGTTCTCATAAAATACTAATGAAAAGCTAGTATCCTTTAGTTGTAGCAACTCTTGAAAACTGGAATATTGCCTTTTTAAATCTAGATACGAGAAAGAGACATAGTCCATTCAACTGTGAAAATCTTAATTTTGATAAAACGATGGTTATTTAAGTAGCAGCAACCTTGCCTGAGACTTAACCTTTTTCTTCTGTGGGGGCCTGCAAATAGCCAAAAATAAACTTTCCTTCTTGTCCCAGTATTTTTTTGCATTATTGGGAACATTGTAGCACCTGCCTGGAGAGCCAGTGAGTGGAGGGCAGTGACTATATTGAATGGTGTTCACTGTCTAACTCAGCTGGGTGGAAATTAAACTCCGTGTGTCTCCACACCACTGGAGAGCTTTTCTCCCCCATCTGGCAGTCTTCCTGTTGAGAAATGTCTCAGGCATGGGTGGCCATAGAACAGGGATTTAAAAAAGCCTGCAGAGAGGCCAAAGTGGCAGCCGGAAACTTAAAAAAGGTTTGATATCAGCCAGTAGGTATAATATTCCAGGTGGATTGGTCTGTGTAATCATCTTTTATTTATGAAGAGAAAAAAAAAAACAGTAGAAACTAAGTCTTAACAATTGGGATTCAGGTTTGTCTATATGACTAAAAGCACATGCATTTGAAACAACAATTACCATTGTGCTATGACACAGAAATATACAAGGGTGTTTCTACAATTACATCACTGAGAGTGAGACTGAAAAGATGGGAAGTCAGAGCAAATAGATGTACACATAACAGCAGACTATCTTATCTTTGCCACGGGGTGAAGTCAGTGTTTCTGATGTAATAGTTAATAATCTAATCTCACAGAAATACAAAATATGTGCACAAATACTATACACACACATACACACACACACACACACACACACACACACACACACACACACCCAGAGGATAGTAACAAAAACCTGCATACATCCTTCTTTTGTTCTACTGCACATGTGTTCTTGTTTCGATTAATCCACATGGGAGCTTGTACACAGGAAGATTTTTTTGTTTGGAAATATTTTCCTTTGTGTGTTTGAAGTAGGGAGAAAGTTGAAAACTGCAGTCCTAAAGAGTTGTGAAGTTTAAATGCAATAATATATAGGAAAATTTTGTAAAATATTATGAGGCGTGCATCTTCATAGAATTTGCTGAGTTTCTAGAATCACTATTTTTTTCAGGTGGAAAAAGTAGAAAATTAAAAAAAAATAATTCTGTTCTAAATAAAGTAATATATAAGTATAGGATTTTTGCTGTAATGCAACAGAGCTGCTTTGCATACTATTAAGATATCACATGCTATGTTGTTTTTTTTTTGAAAGTTTTAGTTGCTTACAACACTCAGTTTTGATCATTTAAGACATCTACATTTTTTCTTCACTGGTAGAGCCATCTATCAACTCAAGTCCTTAAATTGGGAGACCTTATGTGTGTTTAAGATTTTGAAAGTGTGAAAACACCTTCGATCAATGTCTAGAACTTCATTCCAATCTAAATAACATTTGAGAATACTTTGCTTATTTAGGATTATAAGATTTCCCAGAAAGAGTTTTTGAGAATGTTCATGAAAACTAGTCTGTGTTAAGATCAGCTGGGAGGAGGAGAATGAAACAACCTTGATGGCTAGCAGAGTCATCGTAACCTGGATTGCAAGTCCCTCTGAAGAAAACTTCAGAAATTTGCAAGGATCCTGGGAATGCTTTAACCCTGTCTCCCAAGGAGAAGACGGGGGGTGGGGGTGGGGTACATTCTGTGATGAGGGTGTGAGGAGAGCAGATAAAAAGCAGGCTTTATACCTTTGACATCAAGAGGCCTAGAGTCCTGGCCAGAGTGCTCCTCTTTTGACGTTTGTCACCAGTGGGAAATGAGAAAGGGAAACGAAAAGCTTCTTCCTTGAGCAGTCAGAGGATGCTCTTGAGGAAAGCACTAACCAGTCAGGCAAAGTGAAAGTGCTGGTTGCTCAGTCATGTCTGACTCTACGACCCATGGACTGTAGCCCGCCAGGCGGCTCTGTCCATGGAGATCGCCAGGAAAGAATACTGGAGTGGGTAGCCATTCCCCTCTCCAGAGGATCTTTCTGACCCAGGGCTTGAACCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGGAAGCCCCAAGTGGATCAGGGAAACCACACACAAAGGTATTGAGGCCAAGCCAATCTGAGGCCCTTGAAACCCAAAGTCACATCCAGAACCAATGAAATGGTTCATCTCAGAAGACCAGTCGCAGTCTATAAGAGATTACACTGATGAGTAAATCACTAATGGAGATAATGCTAATTTATAATAGATAGAAAAAAAAACATGCAGGATATATTCCTTTCAAACTTCTTTCAAAATATTACATTGAACATTTTCAAAAGACAAATTATCTCAAAAAGCAAGGAAAATAAATGGTCATATGCATGACTATTTTTGAATCAGATGATGGTGGTAGAGATTATTATGGCCTCACCTTGAGGCTTTGTCCTTTTGTTAAGTGTTCATAAATCTTTTAAGGATTTACTGCATAGCACAGGGAACTATATTCAATATCTTGCAATCCCTGGTGGCTCAGTTGGTAAAGAGTCTGCCTGCAGTGCAGGAGACCCAGGTTCGATCCCTGGGTTAGGAAGATATCTCCTGGAGAAGAAAATGGCAACCCACTTCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTAGTGGGCTACAGTCCATAGGGTCGCAAAAGTCAGACACGACTTAGCGACTAAACCTACTTACCTACCTAAATCTTTTAATGTTGATACTACAAGCCTAAGTATCTAATCACAGTCCAACGTTAAGAATAATGAGAGTTCCTTGGATTGTGAGACCAGAGAAAAACATTTTGGTCAAATGGCAGCTTTGTTTTTACATGAAGTCAAAGCAAAACCAAGCCCTGAACTCTGGAGCCAGGAAAGTTAGAATAAATTTTCAGTCACAGTAATGGCCATCGACGCCAGCAACAGACAAAGACAAGGGTGAGACTTTGGTACCTGTTCTTGTCGGCTACGTTGGCTCGTAGACTTGCACCTGCTTCAAAACCCTTGCTTTTTCTGCTTTGATTGTTGCAG
Seq C2 exon
TGTGATGGGACCGATCTTACCCCAAAGATCCAGGAACTGAAGTTCCAGTGTATAGTATTTTTAAATATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980:ENSBTAT00000026616:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]