HsaINT0047329 @ hg38
Intron Retention
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137572765-137577284:-
Coord C1 exon
chr7:137577222-137577284
Coord A exon
chr7:137572839-137577221
Coord C2 exon
chr7:137572765-137572838
Length
4383 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TTCTGTTTTCATTGTTTCAGTGT
3' ss Score
9.92
Exon sequences
Seq C1 exon
GCAGCTTTTTCTGACTTCCTACAGAGAAGTTCTAGAGATCTATCCAAACATGTTAAAGTTGTT
Seq A exon
GTAAGTATTGAATATGTTGATTTATTTAATTTGAATATGATATGACTGCCACAAAAAACTCCCAAATACTTAGTTTATATATTGAATCACTGGACTGCATAGAACTTTGGAGATCATTTTGTGTAGTTCATTCAACCTACACTTATTATGTGTCAGGCACTGTCTTAGTTGCTGGGGATGAAGATAAATGAAAAGACTAGTTTCGCTCCTGAAGAAACTCACAGTTCAGTTTTGAAGAAGGTCACATAAGTCACTTCAGAACAATAAAACTGTTATTCAACCGTGTGTATAATATGGTTGTGGCACAAAGGGAGAAGTGATAACTCTGACTATGGTGGGGTCAGGAAGACCTTTATAAAAAAAAATGATGTTAGCTGGGTCTTGAAGCATAAATCGGTACTCTCCAAACAAGTATCTTTATTCCAGGATAATCTGAGGAGGATATTTATTCCAGGATAATCTCCATTTTAGAACGAAGTGTTGATTTCATTATTTTGTGGTGACTCACTCTCCCACCTGGTCAAGGTTCCTCACCACTAGATGGATTTTTTGTGTATGTGCTGTTTCTTCCTGGGTCTCTATATCAGGTTGCGGAAATATACTGCTTGGGGGCAAGGGAGAGAGAAATTTATCTTTCTCAAGGTGACACATTCAAAAATAGAATAAAATTAGGTATTAAGAAAAACATTAATGTTTCCTTATAGTAAACAAGTTAAAAGAAGGAAGGAACATGACTTTGTTGCACATAGTCGTATAAGTAAATGACAGAATGAGAAAGAGAAAAAAGATATATAGATGGAAAAGAAGTGATGAGAATATAGCAATGTTTGAATTTATCAATGCTTGAATTTATCTTATTCTAAAGAATAAGAATAATTTTGATGGGCCAGGCGCGGTGGCTCATGCCTGTAATCCTAGCTCTTTGGGAGGCCGAGGCAGCTGGATTGCCTGAGCTCAGGAGTTCGAGAGCAGCCTGGGCAAAATGGTGAAATCCCATCTCTATCAAAATACAAAAAATTAGGCAGGCGTGGTGGCATGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGACCGCACCACTGCACTCCAGCCTGGGCGACAGAGCAACACTCCGTCTAAAAAAAAAAAAAAGAAAAAGAAAAAGATTAATTTTGACAAGAGAGAACAGAACAAAATATATACATGAAAATAGAGAAAAATATATGATCTTAAGCTAATGAGATATGAAGAAATATAAGGAGCATGAAAATATAAAAATTAAAATGTGTAATCACCAGTAAAGCATGTATAAGACATGAATCTCCTAAATCAGTTGAAACAAGAGACAAAGGCCTTTACCGCTGCTATTAGCAACACTTGGCATCCCTTTCAGATGTTTCAGTTCTCATACAATAAAAATATAAAGCAAGTATCTTTTAGTGGTGGAGACGCTTGAGACTGAAATATTGCCTTCTTAAAGCTAGATACAAGAACACAGGGCCCATTGAACTATGAGGATTATTATTTCAATAAAATCGTGGCTATTAAATTTAAGTAGCAGCAACCTTACATTAAACTTCCCCTGTTTCTTCAGCTGCCTGCAGCCTAGCAAAAATTAAACTTTACTGCCCTTTCCAGTGTGTTTTGCATTTACAGGCGCATCCACAGTACCTGCCAGGAGACCCAGTGCATGCTGGGTGGTGGCCATATAGAATGGCAGTGTACTGTGCAAGTCACCGGATTGATATCAAACTCTGTAACTTCCTAACTGCTAGAGAGTTTTCTCTCTCATATCTCAGTCCCCTTGATGATACATGTCTCATGCATGGGTGACTTTATAGTAGAGTCTAAAAGATGCTTGCAGAGAGGCCAAAATGGCAGCAAATAACTAGGAAAGATGTGATATCAGCCTATATATGTAATATTAAAGGTGGAATGTTTATATAAATTATATCTTATGAGGAGGAAAAAAATCATTATAACTAGGTGTAAACATTTGGGATTTAGTTAGGTCTACCTTTGCTAGGTATATGACTTTGGGGAAATCATTTAACCTTTCAGAGGAGTTTGCTTTCTTCATCTGTCAAATAGGTGTAACAAGACATGTCTTTGATGCAATGGTTTTTGACCATTGTGCTGTGACATAGAGAGACACAAGGATACTTTTGCAATGACATCATTCTATGTTTTCCTGAGTGTGAGATGAAAAGGATGGAAGGTTAGTGAGAGTGATTAGATGTCTCCCCAACAACAGAGCATCTTTTCTTTGTCAGAGGGTGAAGTCAGTGTTTCTAATGCAATAGCTAGTAATGTCTCATAGAGATATAAAATATGTATTTGAATATTAGACTGAGAAAATACAAAATGACAGTAAAAACCTACATATAGCCATTATTTGTTCCACTTTCCATATTTTCTTCTTGTTATTTATCAGTATATGAGCTTATACAAAGGAACATATTTTGGATGCAAATATGTCCCTTTGTGTGTATTTGAAGTTGGGAAAAAGTTGAAAACTGCTATTCTAAAGGAATTGCACAGTTTATTGCAATAATATATAAAAAAATCTCTGTAAAGCAGTATACAGTGTAAGGCCCACATTTTCGTATGATTTGATGAGTTCCCAGAATCACTAACATGTTTCCCAGAAGGAAAAAGTAGAAAGTTAAAAAATGAATTCTGTTCTAAATACAATAATATTTATTATAATCTTTCTGCAATGCAACCATAATGCTTTATACACTATTAATATATCACATCCTAGGTTTTAAGTTTTAGTTGCTTATAACATGCAATTTTGACATTTACAATGTCTACTTTTTTATTCATTGGCATAGTCATTTATAACTCATTTCAAGTTCTTAAGTAAGTTGGAAGATGTTTGCTTAGTAGTTGAGAGTACTAGAAAAACATCTTTAATGTCTAGAATTTTATTACTAAGTTATATTTGAAAATAATTTGTTTATTTAAAATTGTAAGATTTCTTGGAAACAATTCTTTGAGAATACTCATGAAAATTAGGCTGTATGGAGATCGACTGGGAAAAAAAATGCAGGTGCTGGAGACAACCTGACCACTAGCAAAATCATTATACTTAGATTGAAACTGATCCTAAAGAACTCTTTCAGAATTTGCAGGGAGCTTGGGGATGCTTTGCTCCTCTCTCCAAATGAGAAGGTAATGGGGAAATCCTGTGATAAGGGTATAAGGAAAGCAAATACGAGAGCAGGCTTTACGCCTTTGACATCGGAAAGTCTATAGTCATGACTAGAGTTATTCTCTTTTGACTTTTGTCACCAGTGGGAAATGAGAAAGGAACATGAAAGACTTTTCCTTGATTTATCAAAGGATGATACCCTTGCAGAAAGCGCTAGCAGATCAGGGAAGCCATCCATGTTCGAGGGTTGTTGAGGCCAAGCTAGGCTGAGACCCTTGATTCCCAGGTCTAAATTCCAGGAAGACAGTGAATCTTAGAAGTCTAAAGTCTGAATGGCCAGGCGCAGTGGCTCACGCCTATAATCCCAGCACTTTGTGAGGCCAAGGCGGGTGGATGACCTGAGGTCAGGAGTTCAAGACCAGTCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGCAGGCTGAGGTTGCAGTGAGCTGAGATCACGCCATTGCACTTCGGCCTGGGTGAGTCTGTACAAGATTAAGTTTCTAAGAACAAACCACGAATGAAGATAATACTACTGTATGATAGATATCTTTTCAAAAGTTTGCGGTACATAGACTTTTTAAAAAGTCTTCAAAATATTTGACATTTGCAAAATAAAAATTGTCTCAAAAAACGAAGAAAATAAATCATTATATTTGTGACTTGTTTGAATCAGATAATGATGGTGGTGAATACTACTGCTTTAACTTGAGGCTTTTTTCTTTTCATTCTTTTAAGTGTTCATAAATCTTTTAATGTTGACACCATCAGTCTAGATAACTAATAATCATCCATTGTTAAGAATGATAATATTTCCTTTGATTGTGAGACCAGAGAAGAAATCATTTTAATCAAATGGAGGTTTTGTTCTTACCTTAAGTGCGAACAAAACCAACCTCTGTACCCTGGGTCCAGTAAAGCTATAACCAGAATATATTTTTAATCACTGTGACCGGCATTCACTTAAGCAGAGATAGGGCAAGGAGAAAGAGACCATGGTGTGTACTATTGTCAAACTAGTTATCTTTCATAGGTTTTTAGACTTGTGACTACTTCAAAACCCCTTTTCTGTTTTCATTGTTTCAG
Seq C2 exon
TGTGATGGAACAGATCTCACCCCAAAGATTCAGGAACTGAAGTTCCAGTGTATAGTATTTTTAAATATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680:ENST00000288490:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development